state (Emission order)	Genome %	Rpt_All_DNA.bed.gz	Rpt_All_LINE.bed.gz	Rpt_All_LTR.bed.gz	Rpt_All_LowCmplx.bed.gz	Rpt_All_Other.bed.gz	Rpt_All_RC.bed.gz	Rpt_All_RNA.bed.gz	Rpt_All_SINE.bed.gz	Rpt_All_Satellite.bed.gz	Rpt_All_Simple.bed.gz	Rpt_All_Unknown.bed.gz	Rpt_DNA_DNA.bed.gz	Rpt_DNA_Merlin.bed.gz	Rpt_DNA_MuDR.bed.gz	Rpt_DNA_PiggyBac.bed.gz	Rpt_DNA_TcMar-Mariner.bed.gz	Rpt_DNA_TcMar-Tc2.bed.gz	Rpt_DNA_TcMar-Tigger.bed.gz	Rpt_DNA_TcMar.bed.gz	Rpt_DNA_hAT-Blackjack.bed.gz	Rpt_DNA_hAT-Charlie.bed.gz	Rpt_DNA_hAT-Tip100.bed.gz	Rpt_DNA_hAT.bed.gz	Rpt_LINE_CR1.bed.gz	Rpt_LINE_Dong-R4.bed.gz	Rpt_LINE_L1.bed.gz	Rpt_LINE_L2.bed.gz	Rpt_LINE_Penelope.bed.gz	Rpt_LINE_RTE-BovB.bed.gz	Rpt_LINE_RTE.bed.gz	Rpt_LTR_ERV.bed.gz	Rpt_LTR_ERV1.bed.gz	Rpt_LTR_ERVK.bed.gz	Rpt_LTR_ERVL-MaLR.bed.gz	Rpt_LTR_ERVL.bed.gz	Rpt_LTR_Gypsy.bed.gz	Rpt_LTR_LTR.bed.gz	Rpt_RNA_RNA.bed.gz	Rpt_RNA_TcMar-Mariner.bed.gz	Rpt_RNA_rRNA.bed.gz	Rpt_RNA_scRNA.bed.gz	Rpt_RNA_snRNA.bed.gz	Rpt_RNA_srpRNA.bed.gz	Rpt_RNA_tRNA.bed.gz	Rpt_SINE_Alu.bed.gz	Rpt_SINE_Deu.bed.gz	Rpt_SINE_MIR.bed.gz	Rpt_SINE_SINE.bed.gz	Rpt_SINE_tRNA.bed.gz	Rpt_Satellite_Satellite.bed.gz	Rpt_Satellite_acro.bed.gz	Rpt_Satellite_centr.bed.gz	Rpt_Satellite_telo.bed.gz
1_TssA	0.76252	0.28591	0.18437	0.40266	5.15546	0.08457	0.12094	2.08687	0.51338	0.27359	1.69003	0.14025	0.25349	0.00000	0.06877	0.20088	0.08226	0.10416	0.12390	0.11653	0.20036	0.41365	0.26197	0.96012	0.28404	0.15243	0.12655	0.45955	0.00000	0.51573	0.15787	0.41350	1.08260	0.50919	0.04767	0.09911	0.12759	0.13336	0.06074	0.08293	0.26247	1.43135	1.78524	0.88619	8.81894	0.45521	0.36451	0.72624	0.42987	0.31638	0.37179	0.00000	0.01591	7.11497
2_TssAFlnk	0.18865	0.46131	0.28682	0.42428	0.63077	0.03303	0.33411	1.21731	0.72843	0.20810	0.64875	0.57673	0.76694	0.00000	0.00000	0.29312	0.28800	0.05497	0.22462	0.56881	0.32177	0.65568	0.44291	1.00976	0.60637	0.00000	0.10929	1.12763	0.00000	0.00000	0.31105	0.00000	0.89200	0.47991	0.15043	0.26068	0.49967	0.12702	2.70078	0.84517	1.11226	2.28900	1.10084	0.25988	1.88754	0.45962	1.29881	1.70239	0.80193	1.92277	0.54831	0.00000	0.00000	1.61647
3_TxFlnk	0.03042	0.47992	0.18167	1.17921	0.65527	0.00000	0.00000	1.17247	0.82016	0.28739	0.54344	0.63544	0.98987	0.00000	0.00000	3.55038	0.31317	0.36648	0.44390	0.00000	0.16547	0.58056	0.20101	0.06039	0.33450	0.00000	0.13337	0.40428	0.00000	0.00000	0.17231	0.00000	3.35235	0.06249	0.12167	0.30709	0.06905	0.00000	3.51553	0.00000	0.00000	0.00000	5.52132	0.00000	0.00000	0.83154	0.00000	0.77567	3.71358	0.00000	0.89880	0.00000	0.00000	0.00000
4_Tx	3.39290	0.99649	0.45162	0.34189	0.70391	0.79710	0.63761	1.34615	1.61324	0.15230	0.66555	0.58149	0.64446	1.53205	0.26211	1.13292	0.75079	0.94361	1.18276	1.07936	0.41095	1.07523	0.22856	0.33372	0.78163	0.12112	0.34765	0.91940	0.00000	0.92962	0.73944	0.25402	0.22673	0.46239	0.40342	0.39156	0.06987	0.24861	0.78236	0.97133	1.12309	2.61353	1.66842	2.25721	0.82478	1.79331	0.28212	0.96457	0.80473	0.86712	0.47004	0.00000	0.00246	0.01925
5_TxWk	11.18340	1.14399	0.74516	0.61418	1.01100	1.35927	1.01322	1.40888	1.70845	0.09959	0.90259	0.76202	1.00451	1.64070	0.60327	1.36769	0.90035	1.21535	1.17706	1.33961	0.70715	1.25293	0.66419	0.85618	1.11216	0.97259	0.67265	1.05234	0.08644	0.95532	1.07159	0.63824	0.72074	0.79290	0.56478	0.53590	0.46950	0.58982	0.99175	1.55695	1.11366	2.06910	1.53607	1.58936	0.93691	1.85585	0.87187	1.17795	0.79522	0.94080	0.18872	0.00000	0.05138	0.26948
6_EnhG	0.11294	0.73069	0.28320	0.50518	0.51755	0.05054	0.18602	0.97522	0.83974	0.04167	0.70854	0.79968	0.45647	9.79440	0.00000	0.72786	0.15680	0.61247	0.57130	0.88999	0.62348	0.94427	0.53916	0.55596	0.56662	0.00000	0.14611	0.92594	0.00000	0.00000	0.38200	1.25256	0.65618	0.26492	0.37163	0.59577	0.27804	0.23533	0.72326	0.39461	1.30753	0.43529	0.98100	2.16368	1.17897	0.73156	1.36389	1.23078	0.55381	1.70340	0.13033	0.00000	0.00000	0.00000
7_Enh	2.77955	0.88392	0.41452	1.05994	0.73659	0.01691	1.00595	1.08772	0.72500	0.04072	0.74384	1.24326	1.48502	0.00000	0.16474	0.50319	0.46533	0.56250	0.44342	1.21614	0.95966	1.20700	1.02274	1.35696	1.08000	1.09142	0.24476	1.16906	1.84224	1.86293	0.71096	1.64522	1.61882	0.83748	0.64451	1.05755	1.42696	0.99349	1.22677	1.05866	0.97521	0.72696	0.59899	1.05243	1.80224	0.51998	2.49834	1.46009	2.03876	2.29159	0.11087	0.00000	0.00101	0.22721
8_ZNF/Rpts	0.32924	0.84260	0.85824	2.68949	0.60052	14.56061	0.45543	3.58525	0.71223	26.65116	2.22228	0.14139	0.07009	12.15406	0.36828	0.63766	0.78036	0.60719	0.91316	0.37390	0.20162	0.98391	0.28767	0.30275	0.24196	0.00000	0.95182	0.47796	0.00000	0.00000	0.43464	0.00000	3.18818	4.68681	3.08270	1.06201	0.27282	0.01223	1.25080	0.22630	33.48489	0.94572	0.85212	0.91078	0.52986	0.82464	0.17969	0.30755	0.01620	0.08141	55.59422	76.09432	12.81810	12.75313
9_Het	3.88696	0.74298	1.32486	2.79893	0.77993	7.13618	0.52271	0.69878	0.67492	16.34287	1.29757	0.42973	0.35875	1.87457	1.07629	0.75968	0.91430	0.55382	0.81917	0.38919	0.69883	0.71311	0.65107	0.58068	0.38918	0.21957	1.51357	0.52417	0.00000	0.27693	0.49193	1.96430	3.35477	7.24377	2.88895	1.27265	0.66200	0.52478	0.81464	0.28515	2.15270	0.78799	0.79044	0.63506	0.55551	0.73530	0.16412	0.45858	0.11339	0.31221	8.34147	14.78404	20.44757	9.60586
10_TssBiv	0.23018	0.13312	0.05350	0.08495	8.18492	0.00000	0.00000	1.27301	0.18198	0.30887	2.43815	0.17839	0.15927	0.00000	0.00000	0.00000	0.06555	0.00000	0.02889	0.01981	0.07807	0.17241	0.29658	0.84514	0.11255	0.00000	0.03223	0.15175	0.00000	0.00000	0.06630	1.14077	0.19320	0.22729	0.01722	0.02868	0.12765	0.14347	0.00000	0.13371	2.24677	0.00000	1.05925	0.25097	4.72678	0.11908	0.61589	0.40947	0.00000	0.55409	0.28767	0.00000	0.19999	4.21210
11_BivFlnk	0.17320	0.18363	0.09341	0.10258	1.44834	0.00000	0.00000	0.52675	0.27890	0.51569	1.24099	0.11207	0.14175	0.00000	0.00000	0.17347	0.04172	0.04361	0.05612	0.16836	0.05441	0.26312	0.31384	0.71025	0.27358	0.00000	0.02854	0.39585	0.00000	0.00000	0.05562	0.54856	0.19352	0.19282	0.03499	0.08169	0.16765	0.00000	0.00000	0.05244	2.13331	0.26494	0.57473	0.15361	1.05563	0.06632	1.01188	1.05009	0.29116	0.68896	0.51080	0.00000	0.38747	4.81411
12_EnhBiv	0.30555	0.47508	0.24486	0.47854	1.36288	0.00000	0.75274	0.78706	0.53062	0.22615	1.37453	0.65445	0.94112	0.00000	0.00000	0.18037	0.14918	0.38549	0.10957	0.87795	0.38985	0.64873	1.03011	1.45176	0.83006	1.17923	0.07627	1.01163	0.00000	0.00000	0.30450	0.49033	0.66062	0.68004	0.31474	0.47618	0.82715	0.39540	0.50989	0.36824	2.09746	0.53633	0.58658	0.66793	1.33087	0.23663	1.47591	1.59501	1.21081	1.33993	0.38638	0.00000	0.07954	2.48151
13_ReprPC	0.80553	0.83457	0.50434	0.81103	1.30255	0.07396	0.44092	1.12764	1.12373	0.67572	1.73676	0.73639	1.36008	0.00000	0.42207	0.16681	0.59424	0.70508	0.47847	0.61985	0.95372	1.02047	1.28096	1.67149	1.08502	0.80288	0.32146	1.33958	0.00000	0.36823	0.64627	0.98698	0.88191	0.90608	0.75100	0.80260	0.96460	0.36396	0.63250	0.86000	1.91257	1.39052	0.96577	1.33521	1.27191	0.96420	0.93607	1.70559	1.03414	0.95695	0.45904	0.00000	0.76260	1.35746
14_ReprPCWk	2.89875	1.00175	0.73281	0.95587	1.13621	0.65436	0.76698	1.22265	1.52779	0.31204	1.62047	0.98921	0.74676	1.33762	0.52438	0.63714	0.76747	1.03540	0.69269	1.05698	1.07354	1.16178	1.42079	1.70784	1.30768	1.16798	0.58931	1.37187	0.00000	0.71583	0.94542	0.32758	0.86376	1.00975	0.99516	0.99642	1.15851	0.74293	1.38375	1.18031	1.22564	1.32035	0.90345	1.67152	1.17246	1.50332	1.13157	1.62212	0.52022	0.81359	0.71459	0.00000	0.09719	0.96946
15_Quies	72.92022	1.01504	1.10647	1.00346	0.96004	0.65116	1.07711	0.90116	0.88195	0.32937	0.97373	1.10101	1.05603	0.82531	1.17511	1.01253	1.08837	1.03436	1.03467	0.98983	1.10987	0.97165	1.10244	1.03015	1.02741	1.10142	1.12836	1.00821	1.28788	1.05791	1.06787	1.05709	0.93139	0.72786	1.02267	1.10449	1.14113	1.16569	1.01269	0.96864	0.74676	0.76616	0.91025	0.84606	0.90601	0.86119	1.04459	0.95631	1.08128	1.01954	0.57757	0.23974	0.20117	0.58362
Base	100	3.17622	20.37019	8.52483	0.54494	0.12958	0.01461	0.06285	12.65009	0.40493	0.83937	0.04177	0.01974	0.00057	0.02230	0.01753	0.09120	0.05389	1.09647	0.03047	0.11037	1.45051	0.21341	0.07032	0.35076	0.00389	16.53850	3.35731	0.00034	0.00241	0.11770	0.00619	2.69365	0.28544	3.57966	1.82598	0.12148	0.01604	0.00384	0.01921	0.00567	0.00394	0.01090	0.00850	0.01080	9.90843	0.00579	2.72173	0.00666	0.00747	0.12948	0.00100	0.26624	0.00821