state (Emission order)	Genome %	Rpt_All_DNA.bed.gz	Rpt_All_LINE.bed.gz	Rpt_All_LTR.bed.gz	Rpt_All_LowCmplx.bed.gz	Rpt_All_Other.bed.gz	Rpt_All_RC.bed.gz	Rpt_All_RNA.bed.gz	Rpt_All_SINE.bed.gz	Rpt_All_Satellite.bed.gz	Rpt_All_Simple.bed.gz	Rpt_All_Unknown.bed.gz	Rpt_DNA_DNA.bed.gz	Rpt_DNA_Merlin.bed.gz	Rpt_DNA_MuDR.bed.gz	Rpt_DNA_PiggyBac.bed.gz	Rpt_DNA_TcMar-Mariner.bed.gz	Rpt_DNA_TcMar-Tc2.bed.gz	Rpt_DNA_TcMar-Tigger.bed.gz	Rpt_DNA_TcMar.bed.gz	Rpt_DNA_hAT-Blackjack.bed.gz	Rpt_DNA_hAT-Charlie.bed.gz	Rpt_DNA_hAT-Tip100.bed.gz	Rpt_DNA_hAT.bed.gz	Rpt_LINE_CR1.bed.gz	Rpt_LINE_Dong-R4.bed.gz	Rpt_LINE_L1.bed.gz	Rpt_LINE_L2.bed.gz	Rpt_LINE_Penelope.bed.gz	Rpt_LINE_RTE-BovB.bed.gz	Rpt_LINE_RTE.bed.gz	Rpt_LTR_ERV.bed.gz	Rpt_LTR_ERV1.bed.gz	Rpt_LTR_ERVK.bed.gz	Rpt_LTR_ERVL-MaLR.bed.gz	Rpt_LTR_ERVL.bed.gz	Rpt_LTR_Gypsy.bed.gz	Rpt_LTR_LTR.bed.gz	Rpt_RNA_RNA.bed.gz	Rpt_RNA_TcMar-Mariner.bed.gz	Rpt_RNA_rRNA.bed.gz	Rpt_RNA_scRNA.bed.gz	Rpt_RNA_snRNA.bed.gz	Rpt_RNA_srpRNA.bed.gz	Rpt_RNA_tRNA.bed.gz	Rpt_SINE_Alu.bed.gz	Rpt_SINE_Deu.bed.gz	Rpt_SINE_MIR.bed.gz	Rpt_SINE_SINE.bed.gz	Rpt_SINE_tRNA.bed.gz	Rpt_Satellite_Satellite.bed.gz	Rpt_Satellite_acro.bed.gz	Rpt_Satellite_centr.bed.gz	Rpt_Satellite_telo.bed.gz
1_TssA	0.42098	0.17091	0.09061	0.35523	5.87590	0.05856	0.07302	1.35106	0.26110	0.14106	1.73476	0.10397	0.05210	0.00000	0.00000	0.05823	0.04038	0.03318	0.05324	0.10679	0.14044	0.25877	0.17935	0.63384	0.14677	0.00000	0.05589	0.25804	0.00000	0.12434	0.02875	0.31497	0.99144	0.38390	0.02768	0.07425	0.09285	0.09040	0.00000	0.04554	0.25463	0.89534	2.39195	0.54528	4.47873	0.19884	0.39376	0.48844	0.08408	0.07600	0.31878	0.00000	0.00000	1.93011
2_TssFlnk	0.37928	0.41252	0.28521	0.50399	5.00429	0.12389	0.16851	3.03306	0.79797	0.43488	1.82355	0.15760	0.46475	0.00000	0.13826	0.33921	0.16837	0.19155	0.20809	0.13111	0.27379	0.57512	0.36497	1.30665	0.41179	0.30645	0.20762	0.65376	0.00000	0.89884	0.28822	1.03227	1.34140	0.57085	0.07192	0.12810	0.16377	0.16776	0.85928	0.22260	0.24504	1.96594	1.48094	1.19142	13.67625	0.75438	0.49885	0.95758	0.77089	0.71356	0.46815	0.00000	0.04187	12.70854
3_TssFlnkU	0.09044	0.43191	0.23299	0.51489	0.73086	0.00000	0.33011	1.17524	0.58255	0.16697	0.75045	0.96615	0.67319	0.00000	0.00000	0.49728	0.21421	0.08351	0.19786	0.19110	0.46503	0.61205	0.39933	1.11939	0.39489	0.00000	0.10361	0.85446	0.00000	0.00000	0.21455	0.00000	1.15773	0.57271	0.13777	0.30547	0.44277	0.16475	2.20682	0.68620	0.56740	2.66360	1.24145	0.00000	2.31267	0.30591	1.27743	1.58221	1.17948	2.22760	0.52220	0.00000	0.00000	0.00000
4_TssFlnkD	0.11593	0.49613	0.34061	0.33781	0.54431	0.05376	0.39108	1.23120	0.82252	0.31131	0.61281	0.38087	0.77084	0.00000	0.00000	0.40703	0.32110	0.09773	0.22582	0.70244	0.21560	0.72503	0.45295	1.10628	0.77423	0.00000	0.14180	1.27399	0.00000	0.02316	0.37619	0.81954	0.63986	0.39223	0.15399	0.23477	0.47777	0.07816	2.67328	0.78197	1.24435	1.30052	1.02985	0.42291	2.32562	0.58012	0.79919	1.70196	0.38480	2.32709	0.80682	0.00000	0.00000	2.63046
5_Tx	3.38173	1.00375	0.46062	0.35771	0.70086	1.11870	0.63972	1.35861	1.60965	0.15194	0.68127	0.57671	0.65453	1.53712	0.26298	1.12772	0.77367	0.94287	1.19038	1.06950	0.41120	1.08430	0.22766	0.33172	0.77945	0.08494	0.35921	0.91774	0.00000	0.91285	0.72723	0.36585	0.23581	0.52698	0.42589	0.39732	0.07408	0.23960	0.90671	0.96156	1.19593	2.59285	1.69496	2.24208	0.82494	1.79124	0.31325	0.95548	0.75004	0.86397	0.46888	0.00000	0.00246	0.01931
6_TxWk	11.46514	1.14732	0.74850	0.62871	1.01577	1.29942	1.01490	1.37808	1.70688	0.05568	0.92362	0.78855	0.98242	1.22133	0.56294	1.35937	0.90338	1.20290	1.17556	1.32832	0.75648	1.25448	0.68990	0.87647	1.12575	1.08902	0.67525	1.05848	0.17364	0.98054	1.06333	0.71958	0.73287	0.74174	0.58538	0.54967	0.51424	0.61772	0.97957	1.55165	0.99767	1.97323	1.51367	1.51771	0.94625	1.85197	0.94338	1.18448	0.83002	0.96941	0.14285	0.00000	0.00598	0.29947
7_EnhG1	0.13967	0.74371	0.30507	0.57010	0.58787	0.09353	0.15043	1.06317	0.94980	0.04352	0.84572	0.55256	0.28710	7.92052	0.00000	0.82880	0.26805	0.77985	0.65096	0.85713	0.46375	0.92293	0.48836	0.52623	0.62946	0.88572	0.18219	0.86712	0.00000	0.48050	0.54944	1.01292	0.75626	0.55925	0.44177	0.57462	0.15174	0.49308	0.00000	0.36608	1.78814	0.56321	1.41057	2.51982	0.98554	0.88747	0.69933	1.17302	2.14208	1.42394	0.13612	0.00000	0.00000	0.00000
8_EnhG2	0.02442	0.56505	0.22514	0.83070	0.40318	0.00000	0.00000	0.83976	0.75981	0.03626	0.42533	1.62439	1.23315	0.00000	0.00000	5.36641	0.00000	0.31664	0.45142	0.00000	0.68792	0.65458	0.58388	0.20314	0.24550	0.00000	0.13004	0.69401	0.00000	0.00000	0.16408	0.00000	1.51650	0.36006	0.44128	0.67754	0.63478	0.00000	4.37953	0.00000	0.00000	0.00000	3.29963	0.00000	0.00000	0.67594	0.00000	1.05937	4.62625	0.00000	0.11340	0.00000	0.00000	0.00000
9_EnhA1	0.50609	0.75987	0.38298	1.31921	0.55000	0.00734	0.87791	1.01630	0.64405	0.04934	0.67352	0.97712	1.48536	0.00000	0.33318	0.43960	0.36287	0.34763	0.35876	1.29479	0.93866	1.04065	0.89222	1.16187	1.02917	1.05318	0.22245	1.09190	5.20081	1.73974	0.73059	1.40592	2.40591	0.95914	0.65038	1.06840	1.55998	1.04880	1.31624	0.87833	1.08609	0.71239	0.41561	1.61156	1.36758	0.43089	3.61837	1.40640	2.57920	1.60345	0.11802	0.00000	0.00336	0.46338
10_EnhA2	0.65498	0.93905	0.53452	1.88223	1.32072	0.07285	0.80733	1.49364	0.98525	0.03464	0.83452	1.00140	1.73842	0.00000	0.03561	0.57803	0.73396	1.12285	0.69400	1.47899	0.85335	1.12802	0.89032	1.18915	0.99692	0.82265	0.46001	0.82817	0.00000	1.35041	1.23232	2.56956	3.87639	3.61396	0.77709	0.87986	1.33531	1.67641	1.13275	1.90608	1.51560	2.16926	1.32435	0.47987	1.59898	0.97683	1.68210	1.01020	2.04915	1.56965	0.10833	0.00000	0.00000	0.00000
11_EnhWk	2.23996	0.91080	0.42534	0.96126	0.71991	0.02137	1.00855	1.08580	0.72039	0.03790	0.75410	1.25577	1.53601	0.00000	0.15728	0.53561	0.47970	0.57512	0.45016	1.20088	0.97938	1.24459	1.09652	1.39551	1.08838	1.05707	0.24633	1.22668	1.11096	2.12894	0.69295	1.51693	1.28011	0.71680	0.66261	1.08123	1.42611	0.89095	1.40385	1.04390	1.04798	0.75685	0.60865	0.95694	1.77070	0.50629	2.45680	1.48864	1.96533	2.33658	0.10184	0.00000	0.00049	0.24751
12_ZNF/Rpts	1.74130	0.66834	0.89265	3.02426	0.61361	7.33104	0.38877	1.22176	0.58341	33.52051	1.46996	0.33777	0.26487	2.29804	0.60173	0.68275	0.64061	0.38356	0.65924	0.33186	0.58400	0.72317	0.60944	0.50321	0.26231	0.07199	0.98868	0.50437	0.00000	0.28750	0.39118	1.52923	3.61183	6.61868	3.32063	1.20935	0.54202	0.28435	0.38158	0.25161	8.14065	0.76984	0.74331	0.73597	0.64613	0.62514	0.13141	0.43418	0.15789	0.33791	21.70197	31.19160	39.82179	15.84240
13_Het	4.62215	0.82193	1.79455	2.26253	0.84116	6.95566	0.64512	0.59659	0.72674	4.14176	1.20413	0.50978	0.49099	1.72171	1.30780	0.87680	1.19024	0.79935	1.00348	0.44706	0.86826	0.69069	0.70966	0.58308	0.48617	0.41097	2.08303	0.55548	0.00000	0.27789	0.57342	1.94009	2.74496	5.80934	2.16761	1.29947	0.71695	0.67795	0.82536	0.35117	0.96726	0.81919	0.79726	0.49294	0.55507	0.79716	0.26251	0.47393	0.15043	0.29941	4.78857	6.43374	3.80996	4.42169
14_TssBiv	0.37569	0.14990	0.07282	0.09430	4.62999	0.00982	0.00000	1.45196	0.22351	1.01788	1.76801	0.16096	0.13505	0.00000	0.00000	0.07997	0.05647	0.02010	0.04321	0.09709	0.06373	0.20032	0.31431	0.72223	0.18191	0.00000	0.03152	0.26522	0.00000	0.00000	0.06999	0.14312	0.20350	0.20712	0.02538	0.04783	0.14035	0.08790	0.00000	0.10610	9.33536	0.28135	0.80117	0.22458	2.27634	0.09235	0.84383	0.69931	0.13423	0.43960	1.05736	0.00000	0.87061	5.29541
15_EnhBiv	0.29865	0.46865	0.24323	0.47750	1.40285	0.00000	0.77015	0.78788	0.52126	0.22641	1.37068	0.65457	0.93275	0.00000	0.00000	0.18454	0.11800	0.39441	0.10999	0.66606	0.34712	0.65185	0.97380	1.45503	0.83014	1.20650	0.07633	1.00134	0.00000	0.00000	0.30694	0.50167	0.65529	0.70209	0.31831	0.46917	0.81895	0.40455	0.52168	0.26412	1.74312	0.54873	0.60015	0.87681	1.51996	0.22785	1.51004	1.58420	0.68354	1.50555	0.36916	0.00000	0.08137	2.70622
16_ReprPC	0.82272	0.83340	0.50545	0.81080	1.31371	0.07299	0.43171	1.13019	1.12985	0.65622	1.73656	0.70934	1.35474	0.00000	0.41325	0.17184	0.59194	0.70696	0.47183	0.64324	0.95283	1.02129	1.28329	1.69373	1.07962	0.78610	0.32245	1.34168	0.00000	0.36053	0.65688	0.96636	0.88233	0.89929	0.74895	0.80509	0.98433	0.31915	0.61928	0.84203	2.03824	1.36146	0.99240	1.30731	1.26315	0.97159	0.91651	1.70712	1.06616	0.93695	0.47328	0.00000	0.72012	1.54862
17_ReprPCWk	3.09701	1.00885	0.74871	0.97691	1.11122	0.81609	0.75659	1.18485	1.51350	0.30324	1.63047	0.98950	0.72252	1.25198	0.62290	0.63260	0.77256	1.06655	0.69747	1.11606	1.09178	1.16688	1.44364	1.67317	1.29402	1.12055	0.61025	1.36633	0.00000	0.68170	0.95433	0.46000	0.87794	1.02559	1.02824	1.00493	1.16673	0.80290	1.29625	1.14054	0.95441	1.28689	0.94681	1.68011	1.15827	1.48719	1.15608	1.61421	0.49475	0.90054	0.60497	0.00000	0.13964	0.88758
18_Quies	69.62385	1.01976	1.08333	0.96817	0.96229	0.48291	1.09432	0.90886	0.88272	0.27276	0.96466	1.11808	1.06804	0.91716	1.18778	1.01805	1.08525	1.03737	1.03731	1.00054	1.10701	0.97826	1.10835	1.04007	1.04120	1.10659	1.09706	1.02003	1.33415	1.06977	1.08310	1.00406	0.86514	0.60486	1.00077	1.09932	1.14592	1.17426	1.02046	0.97976	0.75657	0.76176	0.90754	0.86861	0.90975	0.85935	1.04107	0.96656	1.09692	1.03083	0.47756	0.22906	0.16627	0.50170
Base	100	3.17622	20.37019	8.52483	0.54494	0.12958	0.01461	0.06285	12.65009	0.40493	0.83937	0.04177	0.01974	0.00057	0.02230	0.01753	0.09120	0.05389	1.09647	0.03047	0.11037	1.45051	0.21341	0.07032	0.35076	0.00389	16.53850	3.35731	0.00034	0.00241	0.11770	0.00619	2.69365	0.28544	3.57966	1.82598	0.12148	0.01604	0.00384	0.01921	0.00567	0.00394	0.01090	0.00850	0.01080	9.90843	0.00579	2.72173	0.00666	0.00747	0.12948	0.00100	0.26624	0.00821