state (Emission order)	Genome %	Rpt_All_DNA.bed.gz	Rpt_All_LINE.bed.gz	Rpt_All_LTR.bed.gz	Rpt_All_LowCmplx.bed.gz	Rpt_All_Other.bed.gz	Rpt_All_RC.bed.gz	Rpt_All_RNA.bed.gz	Rpt_All_SINE.bed.gz	Rpt_All_Satellite.bed.gz	Rpt_All_Simple.bed.gz	Rpt_All_Unknown.bed.gz	Rpt_DNA_DNA.bed.gz	Rpt_DNA_Merlin.bed.gz	Rpt_DNA_MuDR.bed.gz	Rpt_DNA_PiggyBac.bed.gz	Rpt_DNA_TcMar-Mariner.bed.gz	Rpt_DNA_TcMar-Tc2.bed.gz	Rpt_DNA_TcMar-Tigger.bed.gz	Rpt_DNA_TcMar.bed.gz	Rpt_DNA_hAT-Blackjack.bed.gz	Rpt_DNA_hAT-Charlie.bed.gz	Rpt_DNA_hAT-Tip100.bed.gz	Rpt_DNA_hAT.bed.gz	Rpt_LINE_CR1.bed.gz	Rpt_LINE_Dong-R4.bed.gz	Rpt_LINE_L1.bed.gz	Rpt_LINE_L2.bed.gz	Rpt_LINE_Penelope.bed.gz	Rpt_LINE_RTE-BovB.bed.gz	Rpt_LINE_RTE.bed.gz	Rpt_LTR_ERV.bed.gz	Rpt_LTR_ERV1.bed.gz	Rpt_LTR_ERVK.bed.gz	Rpt_LTR_ERVL-MaLR.bed.gz	Rpt_LTR_ERVL.bed.gz	Rpt_LTR_Gypsy.bed.gz	Rpt_LTR_LTR.bed.gz	Rpt_RNA_RNA.bed.gz	Rpt_RNA_TcMar-Mariner.bed.gz	Rpt_RNA_rRNA.bed.gz	Rpt_RNA_scRNA.bed.gz	Rpt_RNA_snRNA.bed.gz	Rpt_RNA_srpRNA.bed.gz	Rpt_RNA_tRNA.bed.gz	Rpt_SINE_Alu.bed.gz	Rpt_SINE_Deu.bed.gz	Rpt_SINE_MIR.bed.gz	Rpt_SINE_SINE.bed.gz	Rpt_SINE_tRNA.bed.gz	Rpt_Satellite_Satellite.bed.gz	Rpt_Satellite_acro.bed.gz	Rpt_Satellite_centr.bed.gz	Rpt_Satellite_telo.bed.gz
1	2.73262	0.86531	0.41357	1.04854	0.74177	0.01436	0.87868	1.01804	0.73819	0.04416	0.76053	1.17963	1.47710	0.00000	0.15983	0.53025	0.43051	0.55481	0.42099	1.21591	0.93850	1.18354	1.03802	1.38258	1.02879	1.26085	0.24607	1.16259	0.50787	1.81584	0.69906	1.78159	1.59381	0.87577	0.64518	1.03813	1.37712	0.92404	1.06138	0.98372	1.03620	0.77063	0.64235	0.85242	1.65437	0.53417	2.55696	1.47054	1.87841	2.09663	0.12801	0.00000	0.00040	0.14630
2	0.11662	0.65142	0.26849	0.50783	0.53783	0.07909	0.07965	0.81447	0.86185	0.06984	0.71208	0.64849	0.73960	0.00000	0.00000	0.90565	0.41092	0.58751	0.50027	1.16106	0.45551	0.83795	0.43131	0.39506	0.74279	0.00000	0.14163	0.84324	0.00000	0.00000	0.30359	1.21308	0.63683	0.20699	0.40340	0.58160	0.27178	0.51281	1.24206	0.75426	0.08801	0.00000	0.56649	1.50562	1.15463	0.77573	0.48337	1.17374	1.11013	1.52366	0.21843	0.00000	0.00000	0.00000
3	11.10270	1.13530	0.75910	0.63639	0.99644	1.49759	1.04697	1.38568	1.70966	0.08463	0.89545	0.76976	0.97146	1.57434	0.45442	1.50301	0.87883	1.19943	1.16952	1.28773	0.73040	1.24523	0.64409	0.85108	1.09236	0.96687	0.69149	1.04759	0.37069	0.94872	1.02889	0.57541	0.77019	0.85304	0.57584	0.53651	0.46729	0.53172	0.98560	1.48047	1.02475	2.09558	1.48114	1.71777	0.93146	1.85795	0.78225	1.17614	0.77436	0.95063	0.17275	0.00000	0.04101	0.11989
4	3.42471	1.01219	0.45422	0.34616	0.71245	0.97204	0.64738	1.40839	1.61505	0.14340	0.64742	0.58219	0.66070	2.09463	0.22964	1.09370	0.75964	0.93912	1.20602	1.10429	0.40473	1.09148	0.22600	0.35082	0.77664	0.04461	0.35314	0.90811	0.00000	0.80772	0.76009	0.16493	0.24091	0.50584	0.40365	0.38248	0.08687	0.23601	0.97402	1.03096	1.21339	2.57107	1.69626	2.37796	0.85784	1.79555	0.37174	0.96466	0.79230	0.87939	0.44227	0.00000	0.00243	0.01907
5	0.30552	0.77196	0.77130	2.75419	0.59958	15.60190	0.29679	3.72545	0.70927	28.55458	2.65570	0.07593	0.10232	13.09754	0.20341	0.57073	0.66983	0.48010	0.77262	0.13709	0.22598	0.94923	0.29840	0.34219	0.22559	0.00000	0.84322	0.48804	0.00000	0.83468	0.39275	2.08454	3.01353	4.83754	3.30991	1.14711	0.25074	0.11863	0.46584	0.14093	35.80430	1.07009	0.86978	0.72771	0.64053	0.81626	0.00000	0.32410	0.10475	0.21934	61.90449	87.72750	12.57551	13.55380
6	3.23220	0.70150	1.11564	2.91799	0.79103	7.03491	0.45016	0.73641	0.71448	19.39364	1.40753	0.40482	0.30139	2.25431	0.89794	0.72607	0.80902	0.62503	0.71046	0.41656	0.62044	0.71908	0.64713	0.56390	0.38182	0.02337	1.24917	0.56059	0.00000	0.13579	0.42576	2.06230	3.37182	7.36038	3.07805	1.40850	0.75223	0.42905	0.90202	0.26382	2.53304	0.71718	0.74920	0.71738	0.58463	0.77985	0.09014	0.48034	0.17522	0.28250	9.89427	17.49287	24.27091	11.26948
7	74.10671	1.01618	1.11345	1.01097	0.96005	0.68109	1.06952	0.90512	0.88145	0.33881	0.97524	1.09911	1.04642	0.86145	1.21071	0.98935	1.09421	1.02603	1.03693	0.99152	1.10878	0.97214	1.10333	1.03042	1.03140	1.10270	1.13687	1.00811	1.24414	1.06440	1.07239	1.04865	0.94530	0.77187	1.02847	1.10107	1.13608	1.17233	0.99971	0.97572	0.76705	0.76680	0.91290	0.84172	0.91094	0.86045	1.05820	0.95667	1.06818	1.02239	0.56973	0.22477	0.21870	0.60630
8	2.52222	0.99705	0.71899	0.95330	1.11724	0.73539	0.90656	1.17602	1.52569	0.34735	1.61142	0.97621	0.99808	0.08727	0.27207	0.63060	0.72180	1.09909	0.68954	1.07154	1.03269	1.16088	1.41059	1.67217	1.23286	1.18171	0.58344	1.32666	0.91074	0.58482	0.88844	0.62050	0.89326	0.95895	0.98664	0.96718	1.12156	0.71324	1.55627	1.17807	0.99921	1.41708	1.06439	1.29768	1.05896	1.51137	0.89576	1.58322	0.80897	0.68890	0.80821	0.00000	0.10140	1.09765
9	0.77047	0.81635	0.49984	0.82158	1.28546	0.09153	0.30914	1.08683	1.11808	0.76744	1.74100	0.52722	1.38990	0.00000	0.36024	0.24474	0.65102	0.79513	0.45236	0.66250	0.85357	0.99896	1.27688	1.69974	1.06693	0.55279	0.32561	1.29300	0.00000	0.33447	0.67920	0.74462	0.92299	0.89777	0.75588	0.79110	0.85289	0.44717	0.66128	0.84478	1.55780	1.36659	0.95781	1.40781	1.19697	0.96371	1.09747	1.68076	1.09190	0.90342	0.47491	0.00000	0.87513	1.98203
10	0.28458	0.48273	0.24152	0.45342	1.38097	0.00000	0.80355	0.72207	0.53483	0.23584	1.37024	0.70186	1.02370	0.00000	0.00000	0.05052	0.08973	0.52722	0.13407	0.57751	0.38341	0.66829	0.91480	1.47981	0.84764	1.23404	0.07829	0.97584	0.00000	0.13677	0.40544	0.89333	0.60020	0.81477	0.31433	0.42276	0.91128	0.21722	0.54746	0.27599	2.08172	0.93000	0.11347	0.61165	1.48993	0.24968	1.55525	1.56759	0.58271	1.63617	0.42107	0.00000	0.07674	2.50260
11	0.17370	0.17655	0.09031	0.09319	1.68237	0.02124	0.00000	0.63234	0.25707	0.29205	1.33177	0.19855	0.24027	0.00000	0.00000	0.17297	0.02610	0.05591	0.06365	0.04761	0.06774	0.23901	0.32130	0.76241	0.24850	0.00000	0.02450	0.39949	0.00000	0.00000	0.05119	0.00000	0.17484	0.16255	0.03213	0.07999	0.13150	0.00000	0.00000	0.00000	2.91166	0.29719	0.81525	0.48574	0.83895	0.06694	0.54303	0.94871	0.29032	0.19663	0.30378	0.00000	0.10491	6.21142
12	0.22826	0.14282	0.05846	0.08571	8.22043	0.02086	0.00000	1.15761	0.20238	0.34383	2.46648	0.14398	0.15918	0.00000	0.00000	0.00000	0.04919	0.01392	0.03613	0.03066	0.06142	0.18715	0.30538	0.87177	0.14020	0.00000	0.03697	0.15705	0.00000	0.00000	0.02501	0.41623	0.20732	0.13832	0.01549	0.02846	0.16798	0.14467	0.00000	0.17463	1.91844	0.00000	0.82415	0.00000	4.58954	0.13235	0.97562	0.45516	0.00000	0.57390	0.28364	0.00000	0.22755	5.10597
13	0.77302	0.29940	0.18416	0.40349	5.13502	0.10397	0.11930	2.20432	0.52427	0.27669	1.67733	0.21317	0.28943	0.00000	0.06353	0.23296	0.12114	0.13159	0.12432	0.21233	0.19680	0.43274	0.29004	0.96020	0.26621	0.15036	0.12588	0.46412	0.00000	0.50873	0.13722	0.68949	1.07920	0.51772	0.04786	0.10448	0.13955	0.14405	0.54798	0.21996	0.37913	1.38434	1.89971	0.93167	8.89032	0.46146	0.23249	0.75437	0.34875	0.37639	0.39633	0.00000	0.02061	6.72814
14	0.19541	0.45292	0.27896	0.41796	0.82179	0.01556	0.50477	0.92376	0.70970	0.20172	0.73010	0.29363	0.36518	0.00000	0.16532	0.31600	0.25194	0.12455	0.23289	0.20240	0.44634	0.63555	0.39491	1.07381	0.58676	0.00000	0.10396	1.10978	0.00000	0.00000	0.26714	0.00534	0.88539	0.53061	0.13940	0.25123	0.53138	0.27101	2.10745	0.72729	0.27720	1.73600	0.70952	0.12642	1.73958	0.44666	1.24246	1.66235	1.03971	1.80539	0.54850	0.00000	0.00000	1.29880
15	0.03126	0.46735	0.18606	1.15094	0.67274	0.00000	0.00000	1.70653	0.80876	0.22864	0.57390	0.62579	0.75911	0.00000	0.00000	3.45500	0.07817	0.18215	0.42614	0.00000	0.24435	0.55357	0.38928	0.16603	0.30018	0.00000	0.13119	0.44328	0.00000	0.00000	0.25196	0.00000	3.25838	0.14480	0.11636	0.31140	0.06719	0.00000	3.42109	0.00000	1.64146	0.00000	6.19741	0.00000	1.59843	0.81412	0.00000	0.78110	3.14851	2.30945	0.71504	0.00000	0.00000	0.00000
Base	100	3.17622	20.37019	8.52483	0.54494	0.12958	0.01461	0.06285	12.65009	0.40493	0.83937	0.04177	0.01974	0.00057	0.02230	0.01753	0.09120	0.05389	1.09647	0.03047	0.11037	1.45051	0.21341	0.07032	0.35076	0.00389	16.53850	3.35731	0.00034	0.00241	0.11770	0.00619	2.69365	0.28544	3.57966	1.82598	0.12148	0.01604	0.00384	0.01921	0.00567	0.00394	0.01090	0.00850	0.01080	9.90843	0.00579	2.72173	0.00666	0.00747	0.12948	0.00100	0.26624	0.00821