ChromHMM Report

Input Directory: /broad/compbio/anshul/projects/roadmap/segmentations/binary/chmmDefault/coreMarks/binaryData
Output Directory: /broad/compbio/anshul/projects/roadmap/segmentations/models/coreMarks/parallel/set2/n15
Number of States: 15
Assembly: hg19
Full ChromHMM command: LearnModel -b 200 -f /broad/compbio/anshul/projects/roadmap/segmentations/binary/chmmDefault/coreMarks/sets/set2/set2.filenames -i set2 -l /broad/compbio/anshul/projects/encode/rawdata/annotations/genomeSize/hg19.genome /broad/compbio/anshul/projects/roadmap/segmentations/binary/chmmDefault/coreMarks/binaryData /broad/compbio/anshul/projects/roadmap/segmentations/models/coreMarks/parallel/set2/n15 15 hg19

Model Parameters


  • Emission Parameter SVG File
  • Emission Parameter Tab-Delimited Text File

  • Transition Parameter SVG File
  • Transition Parameter Tab-Delimited Text File

  • All Model Parameters Tab-Delimited Text File

    Genome Segmentation Files

  • E001_15_set2 Segmentation File (Four Column Bed File)
  • E003_15_set2 Segmentation File (Four Column Bed File)
  • E005_15_set2 Segmentation File (Four Column Bed File)
  • E006_15_set2 Segmentation File (Four Column Bed File)
  • E008_15_set2 Segmentation File (Four Column Bed File)
  • E009_15_set2 Segmentation File (Four Column Bed File)
  • E010_15_set2 Segmentation File (Four Column Bed File)
  • E011_15_set2 Segmentation File (Four Column Bed File)
  • E014_15_set2 Segmentation File (Four Column Bed File)
  • E015_15_set2 Segmentation File (Four Column Bed File)
  • E016_15_set2 Segmentation File (Four Column Bed File)
  • E017_15_set2 Segmentation File (Four Column Bed File)
  • E019_15_set2 Segmentation File (Four Column Bed File)
  • E020_15_set2 Segmentation File (Four Column Bed File)
  • E021_15_set2 Segmentation File (Four Column Bed File)
  • E023_15_set2 Segmentation File (Four Column Bed File)
  • E025_15_set2 Segmentation File (Four Column Bed File)
  • E027_15_set2 Segmentation File (Four Column Bed File)
  • E029_15_set2 Segmentation File (Four Column Bed File)
  • E032_15_set2 Segmentation File (Four Column Bed File)
  • E036_15_set2 Segmentation File (Four Column Bed File)
  • E039_15_set2 Segmentation File (Four Column Bed File)
  • E040_15_set2 Segmentation File (Four Column Bed File)
  • E041_15_set2 Segmentation File (Four Column Bed File)
  • E045_15_set2 Segmentation File (Four Column Bed File)
  • E046_15_set2 Segmentation File (Four Column Bed File)
  • E049_15_set2 Segmentation File (Four Column Bed File)
  • E051_15_set2 Segmentation File (Four Column Bed File)
  • E054_15_set2 Segmentation File (Four Column Bed File)
  • E055_15_set2 Segmentation File (Four Column Bed File)
  • E058_15_set2 Segmentation File (Four Column Bed File)
  • E061_15_set2 Segmentation File (Four Column Bed File)
  • E062_15_set2 Segmentation File (Four Column Bed File)
  • E063_15_set2 Segmentation File (Four Column Bed File)
  • E066_15_set2 Segmentation File (Four Column Bed File)
  • E067_15_set2 Segmentation File (Four Column Bed File)
  • E068_15_set2 Segmentation File (Four Column Bed File)
  • E071_15_set2 Segmentation File (Four Column Bed File)
  • E072_15_set2 Segmentation File (Four Column Bed File)
  • E073_15_set2 Segmentation File (Four Column Bed File)
  • E075_15_set2 Segmentation File (Four Column Bed File)
  • E078_15_set2 Segmentation File (Four Column Bed File)
  • E080_15_set2 Segmentation File (Four Column Bed File)
  • E085_15_set2 Segmentation File (Four Column Bed File)
  • E088_15_set2 Segmentation File (Four Column Bed File)
  • E090_15_set2 Segmentation File (Four Column Bed File)
  • E091_15_set2 Segmentation File (Four Column Bed File)
  • E103_15_set2 Segmentation File (Four Column Bed File)
  • E111_15_set2 Segmentation File (Four Column Bed File)
  • E115_15_set2 Segmentation File (Four Column Bed File)
  • E118_15_set2 Segmentation File (Four Column Bed File)
  • E119_15_set2 Segmentation File (Four Column Bed File)
  • E120_15_set2 Segmentation File (Four Column Bed File)
  • E121_15_set2 Segmentation File (Four Column Bed File)
  • E123_15_set2 Segmentation File (Four Column Bed File)
  • E124_15_set2 Segmentation File (Four Column Bed File)
  • E125_15_set2 Segmentation File (Four Column Bed File)
  • E126_15_set2 Segmentation File (Four Column Bed File)
  • E127_15_set2 Segmentation File (Four Column Bed File)
  • E128_15_set2 Segmentation File (Four Column Bed File)

    Custom Tracks for loading into the UCSC Genome Browser:
  • E001_15_set2 Browser Custom Track Dense File
  • E001_15_set2 Browser Custom Track Expanded File
  • E003_15_set2 Browser Custom Track Dense File
  • E003_15_set2 Browser Custom Track Expanded File
  • E005_15_set2 Browser Custom Track Dense File
  • E005_15_set2 Browser Custom Track Expanded File
  • E006_15_set2 Browser Custom Track Dense File
  • E006_15_set2 Browser Custom Track Expanded File
  • E008_15_set2 Browser Custom Track Dense File
  • E008_15_set2 Browser Custom Track Expanded File
  • E009_15_set2 Browser Custom Track Dense File
  • E009_15_set2 Browser Custom Track Expanded File
  • E010_15_set2 Browser Custom Track Dense File
  • E010_15_set2 Browser Custom Track Expanded File
  • E011_15_set2 Browser Custom Track Dense File
  • E011_15_set2 Browser Custom Track Expanded File
  • E014_15_set2 Browser Custom Track Dense File
  • E014_15_set2 Browser Custom Track Expanded File
  • E015_15_set2 Browser Custom Track Dense File
  • E015_15_set2 Browser Custom Track Expanded File
  • E016_15_set2 Browser Custom Track Dense File
  • E016_15_set2 Browser Custom Track Expanded File
  • E017_15_set2 Browser Custom Track Dense File
  • E017_15_set2 Browser Custom Track Expanded File
  • E019_15_set2 Browser Custom Track Dense File
  • E019_15_set2 Browser Custom Track Expanded File
  • E020_15_set2 Browser Custom Track Dense File
  • E020_15_set2 Browser Custom Track Expanded File
  • E021_15_set2 Browser Custom Track Dense File
  • E021_15_set2 Browser Custom Track Expanded File
  • E023_15_set2 Browser Custom Track Dense File
  • E023_15_set2 Browser Custom Track Expanded File
  • E025_15_set2 Browser Custom Track Dense File
  • E025_15_set2 Browser Custom Track Expanded File
  • E027_15_set2 Browser Custom Track Dense File
  • E027_15_set2 Browser Custom Track Expanded File
  • E029_15_set2 Browser Custom Track Dense File
  • E029_15_set2 Browser Custom Track Expanded File
  • E032_15_set2 Browser Custom Track Dense File
  • E032_15_set2 Browser Custom Track Expanded File
  • E036_15_set2 Browser Custom Track Dense File
  • E036_15_set2 Browser Custom Track Expanded File
  • E039_15_set2 Browser Custom Track Dense File
  • E039_15_set2 Browser Custom Track Expanded File
  • E040_15_set2 Browser Custom Track Dense File
  • E040_15_set2 Browser Custom Track Expanded File
  • E041_15_set2 Browser Custom Track Dense File
  • E041_15_set2 Browser Custom Track Expanded File
  • E045_15_set2 Browser Custom Track Dense File
  • E045_15_set2 Browser Custom Track Expanded File
  • E046_15_set2 Browser Custom Track Dense File
  • E046_15_set2 Browser Custom Track Expanded File
  • E049_15_set2 Browser Custom Track Dense File
  • E049_15_set2 Browser Custom Track Expanded File
  • E051_15_set2 Browser Custom Track Dense File
  • E051_15_set2 Browser Custom Track Expanded File
  • E054_15_set2 Browser Custom Track Dense File
  • E054_15_set2 Browser Custom Track Expanded File
  • E055_15_set2 Browser Custom Track Dense File
  • E055_15_set2 Browser Custom Track Expanded File
  • E058_15_set2 Browser Custom Track Dense File
  • E058_15_set2 Browser Custom Track Expanded File
  • E061_15_set2 Browser Custom Track Dense File
  • E061_15_set2 Browser Custom Track Expanded File
  • E062_15_set2 Browser Custom Track Dense File
  • E062_15_set2 Browser Custom Track Expanded File
  • E063_15_set2 Browser Custom Track Dense File
  • E063_15_set2 Browser Custom Track Expanded File
  • E066_15_set2 Browser Custom Track Dense File
  • E066_15_set2 Browser Custom Track Expanded File
  • E067_15_set2 Browser Custom Track Dense File
  • E067_15_set2 Browser Custom Track Expanded File
  • E068_15_set2 Browser Custom Track Dense File
  • E068_15_set2 Browser Custom Track Expanded File
  • E071_15_set2 Browser Custom Track Dense File
  • E071_15_set2 Browser Custom Track Expanded File
  • E072_15_set2 Browser Custom Track Dense File
  • E072_15_set2 Browser Custom Track Expanded File
  • E073_15_set2 Browser Custom Track Dense File
  • E073_15_set2 Browser Custom Track Expanded File
  • E075_15_set2 Browser Custom Track Dense File
  • E075_15_set2 Browser Custom Track Expanded File
  • E078_15_set2 Browser Custom Track Dense File
  • E078_15_set2 Browser Custom Track Expanded File
  • E080_15_set2 Browser Custom Track Dense File
  • E080_15_set2 Browser Custom Track Expanded File
  • E085_15_set2 Browser Custom Track Dense File
  • E085_15_set2 Browser Custom Track Expanded File
  • E088_15_set2 Browser Custom Track Dense File
  • E088_15_set2 Browser Custom Track Expanded File
  • E090_15_set2 Browser Custom Track Dense File
  • E090_15_set2 Browser Custom Track Expanded File
  • E091_15_set2 Browser Custom Track Dense File
  • E091_15_set2 Browser Custom Track Expanded File
  • E103_15_set2 Browser Custom Track Dense File
  • E103_15_set2 Browser Custom Track Expanded File
  • E111_15_set2 Browser Custom Track Dense File