state (Emission order)	Genome %	Rpt_All_DNA.bed.gz	Rpt_All_LINE.bed.gz	Rpt_All_LTR.bed.gz	Rpt_All_LowCmplx.bed.gz	Rpt_All_Other.bed.gz	Rpt_All_RC.bed.gz	Rpt_All_RNA.bed.gz	Rpt_All_SINE.bed.gz	Rpt_All_Satellite.bed.gz	Rpt_All_Simple.bed.gz	Rpt_All_Unknown.bed.gz	Rpt_DNA_DNA.bed.gz	Rpt_DNA_Merlin.bed.gz	Rpt_DNA_MuDR.bed.gz	Rpt_DNA_PiggyBac.bed.gz	Rpt_DNA_TcMar-Mariner.bed.gz	Rpt_DNA_TcMar-Tc2.bed.gz	Rpt_DNA_TcMar-Tigger.bed.gz	Rpt_DNA_TcMar.bed.gz	Rpt_DNA_hAT-Blackjack.bed.gz	Rpt_DNA_hAT-Charlie.bed.gz	Rpt_DNA_hAT-Tip100.bed.gz	Rpt_DNA_hAT.bed.gz	Rpt_LINE_CR1.bed.gz	Rpt_LINE_Dong-R4.bed.gz	Rpt_LINE_L1.bed.gz	Rpt_LINE_L2.bed.gz	Rpt_LINE_Penelope.bed.gz	Rpt_LINE_RTE-BovB.bed.gz	Rpt_LINE_RTE.bed.gz	Rpt_LTR_ERV.bed.gz	Rpt_LTR_ERV1.bed.gz	Rpt_LTR_ERVK.bed.gz	Rpt_LTR_ERVL-MaLR.bed.gz	Rpt_LTR_ERVL.bed.gz	Rpt_LTR_Gypsy.bed.gz	Rpt_LTR_LTR.bed.gz	Rpt_RNA_RNA.bed.gz	Rpt_RNA_TcMar-Mariner.bed.gz	Rpt_RNA_rRNA.bed.gz	Rpt_RNA_scRNA.bed.gz	Rpt_RNA_snRNA.bed.gz	Rpt_RNA_srpRNA.bed.gz	Rpt_RNA_tRNA.bed.gz	Rpt_SINE_Alu.bed.gz	Rpt_SINE_Deu.bed.gz	Rpt_SINE_MIR.bed.gz	Rpt_SINE_SINE.bed.gz	Rpt_SINE_tRNA.bed.gz	Rpt_Satellite_Satellite.bed.gz	Rpt_Satellite_acro.bed.gz	Rpt_Satellite_centr.bed.gz	Rpt_Satellite_telo.bed.gz
1_TssA	0.96736	0.55584	0.28008	0.21705	3.81523	0.08787	0.60688	1.76300	0.80540	0.12816	1.42655	0.36446	0.79416	0.00000	0.04741	0.78724	0.26869	0.40202	0.45810	0.59775	0.33767	0.70131	0.30951	0.69204	0.53275	0.13389	0.19663	0.65681	0.00000	0.97785	0.38533	1.25465	0.44519	0.27313	0.10025	0.11397	0.12206	0.12514	0.52341	0.69073	0.64103	1.98370	1.40514	0.81862	5.71599	0.77635	0.77022	0.91100	0.50025	0.92762	0.22347	0.00000	0.06661	0.94583
2_TssAFlnk	1.27719	0.96907	0.49800	0.57281	0.57610	0.00378	0.72441	1.57552	0.79745	0.04746	0.64911	1.12281	1.29782	0.98302	0.11297	0.62998	0.56219	0.75748	0.78171	1.54189	0.90667	1.15787	0.84217	1.19007	1.27293	0.63769	0.30665	1.33590	0.00000	1.76216	0.89180	1.40104	0.66457	0.31752	0.51894	0.55347	0.96499	0.77690	1.14637	1.56687	0.93402	2.03504	1.38442	1.39373	2.24085	0.54183	2.73087	1.71342	1.60479	1.88353	0.13483	0.00000	0.00984	0.18627
3_TxFlnk	0.25439	1.03061	0.46609	0.33372	0.42913	0.02253	0.56290	1.73414	0.92419	0.00000	0.42250	0.82746	0.65725	16.60687	0.00000	1.79409	0.63417	0.92239	0.93327	1.62114	0.82418	1.26354	0.37905	0.50357	1.42482	0.34920	0.25638	1.38196	0.00000	0.45952	0.68015	0.00000	0.21525	0.20714	0.40762	0.38743	0.24479	0.27362	0.46109	1.81372	1.50112	1.87935	2.74029	1.98039	0.90644	0.73541	1.03048	1.60405	2.08791	1.00661	0.00000	0.00000	0.00000	0.00000
4_Tx	3.46162	1.13623	0.50759	0.33781	0.71297	0.03942	0.85699	1.60150	1.45371	0.04272	0.56764	0.72253	0.99793	1.67595	0.31287	1.41220	0.78500	0.99442	1.32792	1.23695	0.48283	1.23981	0.28454	0.37019	0.97377	0.23816	0.38328	1.04960	0.00000	0.83376	0.96564	0.49984	0.19936	0.29239	0.39063	0.45294	0.12873	0.43964	1.22232	1.42956	1.28653	2.52377	1.81788	2.33027	1.07615	1.56763	0.50201	1.04584	0.88028	1.11289	0.14981	0.00000	0.00230	0.02884
5_TxWk	8.88271	1.12712	0.75831	0.51908	1.06122	2.63605	0.85454	1.40926	1.89286	0.31676	0.91603	0.75825	0.80834	0.52652	0.65331	1.53367	0.81408	1.34359	1.20632	1.13858	0.68953	1.22154	0.55307	0.75248	1.02448	0.71828	0.69351	1.03748	0.48380	0.86101	1.02102	0.41574	0.53265	0.78794	0.49202	0.52121	0.39842	0.55385	0.99050	1.42192	1.13946	2.14784	1.69945	1.59309	0.96788	2.13785	0.84717	1.01385	0.69875	1.02807	0.33218	0.32898	0.31505	0.18072
6_EnhG	0.46788	1.10376	0.47050	0.39396	0.53985	0.02450	1.43684	1.47189	1.32471	0.01201	0.57187	0.86137	1.20077	0.00000	0.98453	1.05719	0.71548	1.08703	1.01235	1.26743	0.65397	1.33554	0.47650	0.82967	1.15871	0.00000	0.29807	1.22467	0.00000	1.67137	0.89843	0.08466	0.25054	0.11123	0.45728	0.52661	0.30657	0.21345	0.72686	1.14810	2.31999	2.13144	0.94413	2.47933	1.37393	1.29784	0.88284	1.42148	1.46923	1.69378	0.01873	0.00000	0.00000	0.31574
7_Enh	2.58294	1.09378	0.56805	0.78381	0.83102	0.04536	0.85371	1.33784	1.39415	0.04325	0.86492	1.11331	1.19403	0.48607	0.38109	0.55971	0.63544	0.95253	0.83350	1.46364	1.10461	1.31554	1.09389	1.44251	1.31830	1.03146	0.40326	1.27869	0.58177	1.52107	0.96063	1.50230	0.80118	0.46233	0.74693	0.83669	1.34624	0.96992	1.18858	1.23935	1.18005	1.92253	1.08245	1.77019	1.35006	1.35945	1.93895	1.51868	1.24080	1.48241	0.10522	0.00000	0.00990	0.35657
8_ZNF/Rpts	0.58580	1.20605	1.29119	1.69853	0.53300	0.15960	1.54629	1.85612	0.91972	10.21917	0.76668	0.83974	0.61399	11.82342	0.75653	1.17423	1.01736	0.93295	1.73608	1.01177	0.60359	1.02175	0.54774	0.45407	0.71327	0.00000	1.39348	0.87723	0.00000	0.43581	0.64303	0.29212	1.73755	1.92091	1.99201	1.13215	0.47813	0.59275	2.02545	0.70859	8.07290	1.12326	1.25682	2.23464	1.21732	0.99405	0.40934	0.65304	0.24933	1.06585	30.54367	8.79996	2.75063	0.25837
9_Het	2.65486	0.91195	1.34060	2.43489	0.70310	0.91317	0.54417	1.23609	0.84303	7.33463	1.47213	0.65932	0.62151	1.16546	0.81962	0.82860	1.21427	0.75127	1.12711	0.83457	0.82817	0.78769	0.74396	0.65906	0.55061	0.50598	1.48728	0.73328	1.83503	0.44133	0.64480	1.37845	2.60817	4.12418	2.80543	1.33057	0.91801	0.63791	1.38175	0.59984	4.70714	1.12629	1.14212	1.11835	0.76124	0.90805	0.25012	0.61184	0.17403	0.41406	4.47477	17.12589	8.47965	4.52089
10_TssBiv	0.03151	0.14502	0.06779	0.08931	7.64477	1.07316	0.00000	0.91811	0.16613	0.06667	3.18425	0.00000	0.00000	0.00000	0.00000	0.00000	0.19434	0.10107	0.06087	0.00000	0.15929	0.18157	0.16805	0.76590	0.31558	0.00000	0.03803	0.18961	0.00000	0.00000	0.00000	0.00000	0.22761	0.09282	0.01961	0.03374	0.00000	0.00000	0.00000	0.36338	1.22297	0.00000	1.01417	3.62805	0.18104	0.05695	0.00000	0.56245	0.00000	0.00000	0.03853	0.00000	0.07978	0.00000
11_BivFlnk	0.03853	0.21861	0.11012	0.10772	1.52361	0.00000	0.00000	1.81433	0.22777	0.24089	1.50157	0.21726	0.00000	0.00000	0.00000	0.00000	0.05545	0.15129	0.15083	0.19854	0.06821	0.28216	0.23316	0.61207	0.18344	0.00000	0.04332	0.42733	0.00000	0.00000	0.14287	2.52241	0.15683	0.00000	0.08820	0.07401	0.14317	0.85885	1.99324	0.20106	13.86758	0.00000	0.81400	0.00000	1.52749	0.03368	1.58137	0.92841	0.00000	0.00000	0.34074	0.00000	0.21111	0.00000
12_EnhBiv	0.05721	0.37628	0.24156	0.38820	1.86165	0.00000	0.00000	1.23271	0.38847	0.19926	1.27687	0.51211	0.13767	0.00000	0.00000	0.00000	0.08900	0.39284	0.12533	0.24327	0.49909	0.53167	0.65089	0.75262	0.82808	1.59638	0.10620	0.84293	0.00000	0.00000	0.13518	2.88971	0.30564	0.05556	0.40142	0.46425	1.17473	0.81822	3.70257	0.00000	7.87968	0.00000	0.96587	0.00000	0.82401	0.13221	0.00000	1.31583	0.00000	1.03007	0.23291	0.00000	0.19337	0.00000
13_ReprPC	0.38267	0.56695	0.38152	0.44144	1.89804	0.00000	0.54441	0.96450	0.47574	0.08925	1.17986	0.76032	0.86143	0.00000	0.22789	0.36959	0.47081	0.57975	0.31570	1.50942	0.95577	0.63033	0.79043	1.66744	1.24056	1.37768	0.20586	1.14134	0.00000	1.51687	0.53746	0.05521	0.28041	0.22918	0.49910	0.57418	0.73966	0.21986	0.51162	0.75909	1.23444	1.41682	0.68451	0.04581	2.19304	0.18246	1.13348	1.53081	0.67175	2.07096	0.30069	0.00000	0.01140	0.00000
14_ReprPCWk	9.98682	1.15004	0.78383	0.90535	1.03276	0.63165	1.32839	1.22442	1.14155	0.07481	1.09708	1.32012	1.20607	0.80971	1.22418	0.84668	1.08687	1.11799	0.83571	1.39533	1.36561	1.30254	1.45623	1.67669	1.51714	1.84337	0.64255	1.38160	1.26507	1.01136	1.17281	0.80677	0.73483	0.54071	0.96421	1.04536	1.54300	1.00571	1.26555	1.55218	0.88859	0.96009	0.97309	1.01297	1.31395	1.00761	1.19085	1.62563	0.97435	1.48060	0.23823	0.00000	0.00758	0.23245
15_Quies	68.36850	0.96260	1.11871	1.08655	0.98796	0.98531	1.01048	0.82640	0.84110	1.03079	1.01046	1.01996	1.00535	0.94604	1.11962	0.96595	1.05412	0.96687	0.99302	0.89118	1.03495	0.91226	1.05881	0.96702	0.92891	1.00524	1.16158	0.93342	1.12178	1.01412	1.00896	1.10405	1.10634	1.05973	1.06494	1.10568	1.06042	1.13388	0.92871	0.84444	0.75328	0.69399	0.84370	0.79639	0.85007	0.82931	0.98773	0.88275	1.07057	0.89915	0.92978	0.67949	1.06578	1.19351
Base	100	3.22366	20.55565	8.54278	0.54844	0.13157	0.01477	0.06375	12.81177	0.37155	0.83944	0.04249	0.02007	0.00055	0.02262	0.01774	0.09250	0.05481	1.11254	0.03100	0.11154	1.47242	0.21705	0.07137	0.35603	0.00397	16.65855	3.41537	0.00034	0.00245	0.11967	0.00624	2.65458	0.27250	3.62404	1.84919	0.12360	0.01632	0.00390	0.01956	0.00564	0.00401	0.01103	0.00864	0.01097	10.02203	0.00589	2.76948	0.00676	0.00760	0.10035	0.00102	0.26199	0.00818