ChromHMM Report

Input Directory: /broad/compbio/anshul/projects/roadmap/segmentations/binary/chmmDefault/coreMarks/binaryData
Output Directory: /broad/compbio/anshul/projects/roadmap/segmentations/models/coreMarks/parallel/set2/n10
Number of States: 10
Assembly: hg19
Full ChromHMM command: LearnModel -p 0 -b 200 -f /broad/compbio/anshul/projects/roadmap/segmentations/binary/chmmDefault/coreMarks/sets/set2/set2.filenames -i coreMarks -l /broad/compbio/anshul/projects/encode/rawdata/annotations/genomeSize/hg19.genome /broad/compbio/anshul/projects/roadmap/segmentations/binary/chmmDefault/coreMarks/binaryData /broad/compbio/anshul/projects/roadmap/segmentations/models/coreMarks/parallel/set2/n10 10 hg19

Model Parameters


  • Emission Parameter SVG File
  • Emission Parameter Tab-Delimited Text File

  • Transition Parameter SVG File
  • Transition Parameter Tab-Delimited Text File

  • All Model Parameters Tab-Delimited Text File

    Genome Segmentation Files

  • E001_10_coreMarks Segmentation File (Four Column Bed File)
  • E003_10_coreMarks Segmentation File (Four Column Bed File)
  • E005_10_coreMarks Segmentation File (Four Column Bed File)
  • E006_10_coreMarks Segmentation File (Four Column Bed File)
  • E008_10_coreMarks Segmentation File (Four Column Bed File)
  • E009_10_coreMarks Segmentation File (Four Column Bed File)
  • E010_10_coreMarks Segmentation File (Four Column Bed File)
  • E011_10_coreMarks Segmentation File (Four Column Bed File)
  • E014_10_coreMarks Segmentation File (Four Column Bed File)
  • E015_10_coreMarks Segmentation File (Four Column Bed File)
  • E016_10_coreMarks Segmentation File (Four Column Bed File)
  • E017_10_coreMarks Segmentation File (Four Column Bed File)
  • E019_10_coreMarks Segmentation File (Four Column Bed File)
  • E020_10_coreMarks Segmentation File (Four Column Bed File)
  • E021_10_coreMarks Segmentation File (Four Column Bed File)
  • E023_10_coreMarks Segmentation File (Four Column Bed File)
  • E025_10_coreMarks Segmentation File (Four Column Bed File)
  • E027_10_coreMarks Segmentation File (Four Column Bed File)
  • E029_10_coreMarks Segmentation File (Four Column Bed File)
  • E032_10_coreMarks Segmentation File (Four Column Bed File)
  • E036_10_coreMarks Segmentation File (Four Column Bed File)
  • E039_10_coreMarks Segmentation File (Four Column Bed File)
  • E040_10_coreMarks Segmentation File (Four Column Bed File)
  • E041_10_coreMarks Segmentation File (Four Column Bed File)
  • E045_10_coreMarks Segmentation File (Four Column Bed File)
  • E046_10_coreMarks Segmentation File (Four Column Bed File)
  • E049_10_coreMarks Segmentation File (Four Column Bed File)
  • E051_10_coreMarks Segmentation File (Four Column Bed File)
  • E054_10_coreMarks Segmentation File (Four Column Bed File)
  • E055_10_coreMarks Segmentation File (Four Column Bed File)
  • E058_10_coreMarks Segmentation File (Four Column Bed File)
  • E061_10_coreMarks Segmentation File (Four Column Bed File)
  • E062_10_coreMarks Segmentation File (Four Column Bed File)
  • E063_10_coreMarks Segmentation File (Four Column Bed File)
  • E066_10_coreMarks Segmentation File (Four Column Bed File)
  • E067_10_coreMarks Segmentation File (Four Column Bed File)
  • E068_10_coreMarks Segmentation File (Four Column Bed File)
  • E071_10_coreMarks Segmentation File (Four Column Bed File)
  • E072_10_coreMarks Segmentation File (Four Column Bed File)
  • E073_10_coreMarks Segmentation File (Four Column Bed File)
  • E075_10_coreMarks Segmentation File (Four Column Bed File)
  • E078_10_coreMarks Segmentation File (Four Column Bed File)
  • E080_10_coreMarks Segmentation File (Four Column Bed File)
  • E085_10_coreMarks Segmentation File (Four Column Bed File)
  • E088_10_coreMarks Segmentation File (Four Column Bed File)
  • E090_10_coreMarks Segmentation File (Four Column Bed File)
  • E091_10_coreMarks Segmentation File (Four Column Bed File)
  • E103_10_coreMarks Segmentation File (Four Column Bed File)
  • E111_10_coreMarks Segmentation File (Four Column Bed File)
  • E115_10_coreMarks Segmentation File (Four Column Bed File)
  • E118_10_coreMarks Segmentation File (Four Column Bed File)
  • E119_10_coreMarks Segmentation File (Four Column Bed File)
  • E120_10_coreMarks Segmentation File (Four Column Bed File)
  • E121_10_coreMarks Segmentation File (Four Column Bed File)
  • E123_10_coreMarks Segmentation File (Four Column Bed File)
  • E124_10_coreMarks Segmentation File (Four Column Bed File)
  • E125_10_coreMarks Segmentation File (Four Column Bed File)
  • E126_10_coreMarks Segmentation File (Four Column Bed File)
  • E127_10_coreMarks Segmentation File (Four Column Bed File)
  • E128_10_coreMarks Segmentation File (Four Column Bed File)

    Custom Tracks for loading into the UCSC Genome Browser:
  • E001_10_coreMarks Browser Custom Track Dense File
  • E001_10_coreMarks Browser Custom Track Expanded File
  • E003_10_coreMarks Browser Custom Track Dense File
  • E003_10_coreMarks Browser Custom Track Expanded File
  • E005_10_coreMarks Browser Custom Track Dense File
  • E005_10_coreMarks Browser Custom Track Expanded File
  • E006_10_coreMarks Browser Custom Track Dense File
  • E006_10_coreMarks Browser Custom Track Expanded File
  • E008_10_coreMarks Browser Custom Track Dense File
  • E008_10_coreMarks Browser Custom Track Expanded File
  • E009_10_coreMarks Browser Custom Track Dense File
  • E009_10_coreMarks Browser Custom Track Expanded File
  • E010_10_coreMarks Browser Custom Track Dense File
  • E010_10_coreMarks Browser Custom Track Expanded File
  • E011_10_coreMarks Browser Custom Track Dense File
  • E011_10_coreMarks Browser Custom Track Expanded File
  • E014_10_coreMarks Browser Custom Track Dense File
  • E014_10_coreMarks Browser Custom Track Expanded File
  • E015_10_coreMarks Browser Custom Track Dense File
  • E015_10_coreMarks Browser Custom Track Expanded File
  • E016_10_coreMarks Browser Custom Track Dense File
  • E016_10_coreMarks Browser Custom Track Expanded File
  • E017_10_coreMarks Browser Custom Track Dense File
  • E017_10_coreMarks Browser Custom Track Expanded File
  • E019_10_coreMarks Browser Custom Track Dense File
  • E019_10_coreMarks Browser Custom Track Expanded File
  • E020_10_coreMarks Browser Custom Track Dense File
  • E020_10_coreMarks Browser Custom Track Expanded File
  • E021_10_coreMarks Browser Custom Track Dense File
  • E021_10_coreMarks Browser Custom Track Expanded File
  • E023_10_coreMarks Browser Custom Track Dense File
  • E023_10_coreMarks Browser Custom Track Expanded File
  • E025_10_coreMarks Browser Custom Track Dense File
  • E025_10_coreMarks Browser Custom Track Expanded File
  • E027_10_coreMarks Browser Custom Track Dense File
  • E027_10_coreMarks Browser Custom Track Expanded File
  • E029_10_coreMarks Browser Custom Track Dense File
  • E029_10_coreMarks Browser Custom Track Expanded File
  • E032_10_coreMarks Browser Custom Track Dense File
  • E032_10_coreMarks Browser Custom Track Expanded File
  • E036_10_coreMarks Browser Custom Track Dense File
  • E036_10_coreMarks Browser Custom Track Expanded File
  • E039_10_coreMarks Browser Custom Track Dense File
  • E039_10_coreMarks Browser Custom Track Expanded File
  • E040_10_coreMarks Browser Custom Track Dense File
  • E040_10_coreMarks Browser Custom Track Expanded File
  • E041_10_coreMarks Browser Custom Track Dense File
  • E041_10_coreMarks Browser Custom Track Expanded File
  • E045_10_coreMarks Browser Custom Track Dense File
  • E045_10_coreMarks Browser Custom Track Expanded File
  • E046_10_coreMarks Browser Custom Track Dense File
  • E046_10_coreMarks Browser Custom Track Expanded File
  • E049_10_coreMarks Browser Custom Track Dense File
  • E049_10_coreMarks Browser Custom Track Expanded File
  • E051_10_coreMarks Browser Custom Track Dense File
  • E051_10_coreMarks Browser Custom Track Expanded File
  • E054_10_coreMarks Browser Custom Track Dense File
  • E054_10_coreMarks Browser Custom Track Expanded File
  • E055_10_coreMarks Browser Custom Track Dense File
  • E055_10_coreMarks Browser Custom Track Expanded File
  • E058_10_coreMarks Browser Custom Track Dense File
  • E058_10_coreMarks Browser Custom Track Expanded File
  • E061_10_coreMarks Browser Custom Track Dense File
  • E061_10_coreMarks Browser Custom Track Expanded File
  • E062_10_coreMarks Browser Custom Track Dense File
  • E062_10_coreMarks Browser Custom Track Expanded File
  • E063_10_coreMarks Browser Custom Track Dense File
  • E063_10_coreMarks Browser Custom Track Expanded File
  • E066_10_coreMarks Browser Custom Track Dense File
  • E066_10_coreMarks Browser Custom Track Expanded File
  • E067_10_coreMarks Browser Custom Track Dense File
  • E067_10_coreMarks Browser Custom Track Expanded File
  • E068_10_coreMarks Browser Custom Track Dense File
  • E068_10_coreMarks Browser Custom Track Expanded File
  • E071_10_coreMarks Browser Custom Track Dense File
  • E071_10_coreMarks Browser Custom Track Expanded File
  • E072_10_coreMarks Browser Custom Track Dense File
  • E072_10_coreMarks Browser Custom Track Expanded File
  • E073_10_coreMarks Browser Custom Track Dense File
  • E073_10_coreMarks Browser Custom Track Expanded File
  • E075_10_coreMarks Browser Custom Track Dense File
  • E075_10_coreMarks Browser Cu