ChromHMM Report

Input Directory: /broad/compbio/anshul/projects/roadmap/segmentations/binary/chmmDefault/coreMarks/binaryData
Output Directory: /broad/compbio/anshul/projects/roadmap/segmentations/models/coreMarks/parallel/set2/n11
Number of States: 11
Assembly: hg19
Full ChromHMM command: LearnModel -p 0 -b 200 -f /broad/compbio/anshul/projects/roadmap/segmentations/binary/chmmDefault/coreMarks/sets/set2/set2.filenames -i coreMarks -l /broad/compbio/anshul/projects/encode/rawdata/annotations/genomeSize/hg19.genome /broad/compbio/anshul/projects/roadmap/segmentations/binary/chmmDefault/coreMarks/binaryData /broad/compbio/anshul/projects/roadmap/segmentations/models/coreMarks/parallel/set2/n11 11 hg19

Model Parameters


  • Emission Parameter SVG File
  • Emission Parameter Tab-Delimited Text File

  • Transition Parameter SVG File
  • Transition Parameter Tab-Delimited Text File

  • All Model Parameters Tab-Delimited Text File

    Genome Segmentation Files

  • E001_11_coreMarks Segmentation File (Four Column Bed File)
  • E003_11_coreMarks Segmentation File (Four Column Bed File)
  • E005_11_coreMarks Segmentation File (Four Column Bed File)
  • E006_11_coreMarks Segmentation File (Four Column Bed File)
  • E008_11_coreMarks Segmentation File (Four Column Bed File)
  • E009_11_coreMarks Segmentation File (Four Column Bed File)
  • E010_11_coreMarks Segmentation File (Four Column Bed File)
  • E011_11_coreMarks Segmentation File (Four Column Bed File)
  • E014_11_coreMarks Segmentation File (Four Column Bed File)
  • E015_11_coreMarks Segmentation File (Four Column Bed File)
  • E016_11_coreMarks Segmentation File (Four Column Bed File)
  • E017_11_coreMarks Segmentation File (Four Column Bed File)
  • E019_11_coreMarks Segmentation File (Four Column Bed File)
  • E020_11_coreMarks Segmentation File (Four Column Bed File)
  • E021_11_coreMarks Segmentation File (Four Column Bed File)
  • E023_11_coreMarks Segmentation File (Four Column Bed File)
  • E025_11_coreMarks Segmentation File (Four Column Bed File)
  • E027_11_coreMarks Segmentation File (Four Column Bed File)
  • E029_11_coreMarks Segmentation File (Four Column Bed File)
  • E032_11_coreMarks Segmentation File (Four Column Bed File)
  • E036_11_coreMarks Segmentation File (Four Column Bed File)
  • E039_11_coreMarks Segmentation File (Four Column Bed File)
  • E040_11_coreMarks Segmentation File (Four Column Bed File)
  • E041_11_coreMarks Segmentation File (Four Column Bed File)
  • E045_11_coreMarks Segmentation File (Four Column Bed File)
  • E046_11_coreMarks Segmentation File (Four Column Bed File)
  • E049_11_coreMarks Segmentation File (Four Column Bed File)
  • E051_11_coreMarks Segmentation File (Four Column Bed File)
  • E054_11_coreMarks Segmentation File (Four Column Bed File)
  • E055_11_coreMarks Segmentation File (Four Column Bed File)
  • E058_11_coreMarks Segmentation File (Four Column Bed File)
  • E061_11_coreMarks Segmentation File (Four Column Bed File)
  • E062_11_coreMarks Segmentation File (Four Column Bed File)
  • E063_11_coreMarks Segmentation File (Four Column Bed File)
  • E066_11_coreMarks Segmentation File (Four Column Bed File)
  • E067_11_coreMarks Segmentation File (Four Column Bed File)
  • E068_11_coreMarks Segmentation File (Four Column Bed File)
  • E071_11_coreMarks Segmentation File (Four Column Bed File)
  • E072_11_coreMarks Segmentation File (Four Column Bed File)
  • E073_11_coreMarks Segmentation File (Four Column Bed File)
  • E075_11_coreMarks Segmentation File (Four Column Bed File)
  • E078_11_coreMarks Segmentation File (Four Column Bed File)
  • E080_11_coreMarks Segmentation File (Four Column Bed File)
  • E085_11_coreMarks Segmentation File (Four Column Bed File)
  • E088_11_coreMarks Segmentation File (Four Column Bed File)
  • E090_11_coreMarks Segmentation File (Four Column Bed File)
  • E091_11_coreMarks Segmentation File (Four Column Bed File)
  • E103_11_coreMarks Segmentation File (Four Column Bed File)
  • E111_11_coreMarks Segmentation File (Four Column Bed File)
  • E115_11_coreMarks Segmentation File (Four Column Bed File)
  • E118_11_coreMarks Segmentation File (Four Column Bed File)
  • E119_11_coreMarks Segmentation File (Four Column Bed File)
  • E120_11_coreMarks Segmentation File (Four Column Bed File)
  • E121_11_coreMarks Segmentation File (Four Column Bed File)
  • E123_11_coreMarks Segmentation File (Four Column Bed File)
  • E124_11_coreMarks Segmentation File (Four Column Bed File)
  • E125_11_coreMarks Segmentation File (Four Column Bed File)
  • E126_11_coreMarks Segmentation File (Four Column Bed File)
  • E127_11_coreMarks Segmentation File (Four Column Bed File)
  • E128_11_coreMarks Segmentation File (Four Column Bed File)

    Custom Tracks for loading into the UCSC Genome Browser:
  • E001_11_coreMarks Browser Custom Track Dense File
  • E001_11_coreMarks Browser Custom Track Expanded File
  • E003_11_coreMarks Browser Custom Track Dense File
  • E003_11_coreMarks Browser Custom Track Expanded File
  • E005_11_coreMarks Browser Custom Track Dense File
  • E005_11_coreMarks Browser Custom Track Expanded File
  • E006_11_coreMarks Browser Custom Track Dense File
  • E006_11_coreMarks Browser Custom Track Expanded File
  • E008_11_coreMarks Browser Custom Track Dense File
  • E008_11_coreMarks Browser Custom Track Expanded File
  • E009_11_coreMarks Browser Custom Track Dense File
  • E009_11_coreMarks Browser Custom Track Expanded File
  • E010_11_coreMarks Browser Custom Track Dense File
  • E010_11_coreMarks Browser Custom Track Expanded File
  • E011_11_coreMarks Browser Custom Track Dense File
  • E011_11_coreMarks Browser Custom Track Expanded File
  • E014_11_coreMarks Browser Custom Track Dense File
  • E014_11_coreMarks Browser Custom Track Expanded File
  • E015_11_coreMarks Browser Custom Track Dense File
  • E015_11_coreMarks Browser Custom Track Expanded File
  • E016_11_coreMarks Browser Custom Track Dense File
  • E016_11_coreMarks Browser Custom Track Expanded File
  • E017_11_coreMarks Browser Custom Track Dense File
  • E017_11_coreMarks Browser Custom Track Expanded File
  • E019_11_coreMarks Browser Custom Track Dense File
  • E019_11_coreMarks Browser Custom Track Expanded File
  • E020_11_coreMarks Browser Custom Track Dense File
  • E020_11_coreMarks Browser Custom Track Expanded File
  • E021_11_coreMarks Browser Custom Track Dense File
  • E021_11_coreMarks Browser Custom Track Expanded File
  • E023_11_coreMarks Browser Custom Track Dense File
  • E023_11_coreMarks Browser Custom Track Expanded File
  • E025_11_coreMarks Browser Custom Track Dense File
  • E025_11_coreMarks Browser Custom Track Expanded File
  • E027_11_coreMarks Browser Custom Track Dense File
  • E027_11_coreMarks Browser Custom Track Expanded File
  • E029_11_coreMarks Browser Custom Track Dense File
  • E029_11_coreMarks Browser Custom Track Expanded File
  • E032_11_coreMarks Browser Custom Track Dense File
  • E032_11_coreMarks Browser Custom Track Expanded File
  • E036_11_coreMarks Browser Custom Track Dense File
  • E036_11_coreMarks Browser Custom Track Expanded File
  • E039_11_coreMarks Browser Custom Track Dense File
  • E039_11_coreMarks Browser Custom Track Expanded File
  • E040_11_coreMarks Browser Custom Track Dense File
  • E040_11_coreMarks Browser Custom Track Expanded File
  • E041_11_coreMarks Browser Custom Track Dense File
  • E041_11_coreMarks Browser Custom Track Expanded File
  • E045_11_coreMarks Browser Custom Track Dense File
  • E045_11_coreMarks Browser Custom Track Expanded File
  • E046_11_coreMarks Browser Custom Track Dense File
  • E046_11_coreMarks Browser Custom Track Expanded File
  • E049_11_coreMarks Browser Custom Track Dense File
  • E049_11_coreMarks Browser Custom Track Expanded File
  • E051_11_coreMarks Browser Custom Track Dense File
  • E051_11_coreMarks Browser Custom Track Expanded File
  • E054_11_coreMarks Browser Custom Track Dense File
  • E054_11_coreMarks Browser Custom Track Expanded File
  • E055_11_coreMarks Browser Custom Track Dense File
  • E055_11_coreMarks Browser Custom Track Expanded File
  • E058_11_coreMarks Browser Custom Track Dense File
  • E058_11_coreMarks Browser Custom Track Expanded File
  • E061_11_coreMarks Browser Custom Track Dense File
  • E061_11_coreMarks Browser Custom Track Expanded File
  • E062_11_coreMarks Browser Custom Track Dense File
  • E062_11_coreMarks Browser Custom Track Expanded File
  • E063_11_coreMarks Browser Custom Track Dense File
  • E063_11_coreMarks Browser Custom Track Expanded File
  • E066_11_coreMarks Browser Custom Track Dense File
  • E066_11_coreMarks Browser Custom Track Expanded File
  • E067_11_coreMarks Browser Custom Track Dense File
  • E067_11_coreMarks Browser Custom Track Expanded File
  • E068_11_coreMarks Browser Custom Track Dense File
  • E068_11_coreMarks Browser Custom Track Expanded File
  • E071_11_coreMarks Browser Custom Track Dense File
  • E071_11_coreMarks Browser Custom Track Expanded File
  • E072_11_coreMarks Browser Custom Track Dense File
  • E072_11_coreMarks Browser Custom Track Expanded File
  • E073_11_coreMarks Browser Custom Track Dense File
  • E073_11_coreMarks Browser Custom Track Expanded File
  • E075_11_coreMarks Browser Custom Track Dense File
  • E075_11_coreMarks Browser Cu