ChromHMM Report

Input Directory: /broad/compbio/anshul/projects/roadmap/segmentations/binary/chmmDefault/coreMarks/binaryData
Output Directory: /broad/compbio/anshul/projects/roadmap/segmentations/models/coreMarks/parallel/set2/n12
Number of States: 12
Assembly: hg19
Full ChromHMM command: LearnModel -p 0 -b 200 -f /broad/compbio/anshul/projects/roadmap/segmentations/binary/chmmDefault/coreMarks/sets/set2/set2.filenames -i coreMarks -l /broad/compbio/anshul/projects/encode/rawdata/annotations/genomeSize/hg19.genome /broad/compbio/anshul/projects/roadmap/segmentations/binary/chmmDefault/coreMarks/binaryData /broad/compbio/anshul/projects/roadmap/segmentations/models/coreMarks/parallel/set2/n12 12 hg19

Model Parameters


  • Emission Parameter SVG File
  • Emission Parameter Tab-Delimited Text File

  • Transition Parameter SVG File
  • Transition Parameter Tab-Delimited Text File

  • All Model Parameters Tab-Delimited Text File

    Genome Segmentation Files

  • E001_12_coreMarks Segmentation File (Four Column Bed File)
  • E003_12_coreMarks Segmentation File (Four Column Bed File)
  • E005_12_coreMarks Segmentation File (Four Column Bed File)
  • E006_12_coreMarks Segmentation File (Four Column Bed File)
  • E008_12_coreMarks Segmentation File (Four Column Bed File)
  • E009_12_coreMarks Segmentation File (Four Column Bed File)
  • E010_12_coreMarks Segmentation File (Four Column Bed File)
  • E011_12_coreMarks Segmentation File (Four Column Bed File)
  • E014_12_coreMarks Segmentation File (Four Column Bed File)
  • E015_12_coreMarks Segmentation File (Four Column Bed File)
  • E016_12_coreMarks Segmentation File (Four Column Bed File)
  • E017_12_coreMarks Segmentation File (Four Column Bed File)
  • E019_12_coreMarks Segmentation File (Four Column Bed File)
  • E020_12_coreMarks Segmentation File (Four Column Bed File)
  • E021_12_coreMarks Segmentation File (Four Column Bed File)
  • E023_12_coreMarks Segmentation File (Four Column Bed File)
  • E025_12_coreMarks Segmentation File (Four Column Bed File)
  • E027_12_coreMarks Segmentation File (Four Column Bed File)
  • E029_12_coreMarks Segmentation File (Four Column Bed File)
  • E032_12_coreMarks Segmentation File (Four Column Bed File)
  • E036_12_coreMarks Segmentation File (Four Column Bed File)
  • E039_12_coreMarks Segmentation File (Four Column Bed File)
  • E040_12_coreMarks Segmentation File (Four Column Bed File)
  • E041_12_coreMarks Segmentation File (Four Column Bed File)
  • E045_12_coreMarks Segmentation File (Four Column Bed File)
  • E046_12_coreMarks Segmentation File (Four Column Bed File)
  • E049_12_coreMarks Segmentation File (Four Column Bed File)
  • E051_12_coreMarks Segmentation File (Four Column Bed File)
  • E054_12_coreMarks Segmentation File (Four Column Bed File)
  • E055_12_coreMarks Segmentation File (Four Column Bed File)
  • E058_12_coreMarks Segmentation File (Four Column Bed File)
  • E061_12_coreMarks Segmentation File (Four Column Bed File)
  • E062_12_coreMarks Segmentation File (Four Column Bed File)
  • E063_12_coreMarks Segmentation File (Four Column Bed File)
  • E066_12_coreMarks Segmentation File (Four Column Bed File)
  • E067_12_coreMarks Segmentation File (Four Column Bed File)
  • E068_12_coreMarks Segmentation File (Four Column Bed File)
  • E071_12_coreMarks Segmentation File (Four Column Bed File)
  • E072_12_coreMarks Segmentation File (Four Column Bed File)
  • E073_12_coreMarks Segmentation File (Four Column Bed File)
  • E075_12_coreMarks Segmentation File (Four Column Bed File)
  • E078_12_coreMarks Segmentation File (Four Column Bed File)
  • E080_12_coreMarks Segmentation File (Four Column Bed File)
  • E085_12_coreMarks Segmentation File (Four Column Bed File)
  • E088_12_coreMarks Segmentation File (Four Column Bed File)
  • E090_12_coreMarks Segmentation File (Four Column Bed File)
  • E091_12_coreMarks Segmentation File (Four Column Bed File)
  • E103_12_coreMarks Segmentation File (Four Column Bed File)
  • E111_12_coreMarks Segmentation File (Four Column Bed File)
  • E115_12_coreMarks Segmentation File (Four Column Bed File)
  • E118_12_coreMarks Segmentation File (Four Column Bed File)
  • E119_12_coreMarks Segmentation File (Four Column Bed File)
  • E120_12_coreMarks Segmentation File (Four Column Bed File)
  • E121_12_coreMarks Segmentation File (Four Column Bed File)
  • E123_12_coreMarks Segmentation File (Four Column Bed File)
  • E124_12_coreMarks Segmentation File (Four Column Bed File)
  • E125_12_coreMarks Segmentation File (Four Column Bed File)
  • E126_12_coreMarks Segmentation File (Four Column Bed File)
  • E127_12_coreMarks Segmentation File (Four Column Bed File)
  • E128_12_coreMarks Segmentation File (Four Column Bed File)

    Custom Tracks for loading into the UCSC Genome Browser:
  • E001_12_coreMarks Browser Custom Track Dense File
  • E001_12_coreMarks Browser Custom Track Expanded File
  • E003_12_coreMarks Browser Custom Track Dense File
  • E003_12_coreMarks Browser Custom Track Expanded File
  • E005_12_coreMarks Browser Custom Track Dense File
  • E005_12_coreMarks Browser Custom Track Expanded File
  • E006_12_coreMarks Browser Custom Track Dense File
  • E006_12_coreMarks Browser Custom Track Expanded File
  • E008_12_coreMarks Browser Custom Track Dense File
  • E008_12_coreMarks Browser Custom Track Expanded File
  • E009_12_coreMarks Browser Custom Track Dense File
  • E009_12_coreMarks Browser Custom Track Expanded File
  • E010_12_coreMarks Browser Custom Track Dense File
  • E010_12_coreMarks Browser Custom Track Expanded File
  • E011_12_coreMarks Browser Custom Track Dense File
  • E011_12_coreMarks Browser Custom Track Expanded File
  • E014_12_coreMarks Browser Custom Track Dense File
  • E014_12_coreMarks Browser Custom Track Expanded File
  • E015_12_coreMarks Browser Custom Track Dense File
  • E015_12_coreMarks Browser Custom Track Expanded File
  • E016_12_coreMarks Browser Custom Track Dense File
  • E016_12_coreMarks Browser Custom Track Expanded File
  • E017_12_coreMarks Browser Custom Track Dense File
  • E017_12_coreMarks Browser Custom Track Expanded File
  • E019_12_coreMarks Browser Custom Track Dense File
  • E019_12_coreMarks Browser Custom Track Expanded File
  • E020_12_coreMarks Browser Custom Track Dense File
  • E020_12_coreMarks Browser Custom Track Expanded File
  • E021_12_coreMarks Browser Custom Track Dense File
  • E021_12_coreMarks Browser Custom Track Expanded File
  • E023_12_coreMarks Browser Custom Track Dense File
  • E023_12_coreMarks Browser Custom Track Expanded File
  • E025_12_coreMarks Browser Custom Track Dense File
  • E025_12_coreMarks Browser Custom Track Expanded File
  • E027_12_coreMarks Browser Custom Track Dense File
  • E027_12_coreMarks Browser Custom Track Expanded File
  • E029_12_coreMarks Browser Custom Track Dense File
  • E029_12_coreMarks Browser Custom Track Expanded File
  • E032_12_coreMarks Browser Custom Track Dense File
  • E032_12_coreMarks Browser Custom Track Expanded File
  • E036_12_coreMarks Browser Custom Track Dense File
  • E036_12_coreMarks Browser Custom Track Expanded File
  • E039_12_coreMarks Browser Custom Track Dense File
  • E039_12_coreMarks Browser Custom Track Expanded File
  • E040_12_coreMarks Browser Custom Track Dense File
  • E040_12_coreMarks Browser Custom Track Expanded File
  • E041_12_coreMarks Browser Custom Track Dense File
  • E041_12_coreMarks Browser Custom Track Expanded File
  • E045_12_coreMarks Browser Custom Track Dense File
  • E045_12_coreMarks Browser Custom Track Expanded File
  • E046_12_coreMarks Browser Custom Track Dense File
  • E046_12_coreMarks Browser Custom Track Expanded File
  • E049_12_coreMarks Browser Custom Track Dense File
  • E049_12_coreMarks Browser Custom Track Expanded File
  • E051_12_coreMarks Browser Custom Track Dense File
  • E051_12_coreMarks Browser Custom Track Expanded File
  • E054_12_coreMarks Browser Custom Track Dense File
  • E054_12_coreMarks Browser Custom Track Expanded File
  • E055_12_coreMarks Browser Custom Track Dense File
  • E055_12_coreMarks Browser Custom Track Expanded File
  • E058_12_coreMarks Browser Custom Track Dense File
  • E058_12_coreMarks Browser Custom Track Expanded File
  • E061_12_coreMarks Browser Custom Track Dense File
  • E061_12_coreMarks Browser Custom Track Expanded File
  • E062_12_coreMarks Browser Custom Track Dense File
  • E062_12_coreMarks Browser Custom Track Expanded File
  • E063_12_coreMarks Browser Custom Track Dense File
  • E063_12_coreMarks Browser Custom Track Expanded File
  • E066_12_coreMarks Browser Custom Track Dense File
  • E066_12_coreMarks Browser Custom Track Expanded File
  • E067_12_coreMarks Browser Custom Track Dense File
  • E067_12_coreMarks Browser Custom Track Expanded File
  • E068_12_coreMarks Browser Custom Track Dense File
  • E068_12_coreMarks Browser Custom Track Expanded File
  • E071_12_coreMarks Browser Custom Track Dense File
  • E071_12_coreMarks Browser Custom Track Expanded File
  • E072_12_coreMarks Browser Custom Track Dense File
  • E072_12_coreMarks Browser Custom Track Expanded File
  • E073_12_coreMarks Browser Custom Track Dense File
  • E073_12_coreMarks Browser Custom Track Expanded File
  • E075_12_coreMarks Browser Custom Track Dense File
  • E075_12_coreMarks Browser Cu