ChromHMM Report

Input Directory: /broad/compbio/anshul/projects/roadmap/segmentations/binary/chmmDefault/coreMarks/binaryData
Output Directory: /broad/compbio/anshul/projects/roadmap/segmentations/models/coreMarks/parallel/set2/n13
Number of States: 13
Assembly: hg19
Full ChromHMM command: LearnModel -p 0 -b 200 -f /broad/compbio/anshul/projects/roadmap/segmentations/binary/chmmDefault/coreMarks/sets/set2/set2.filenames -i coreMarks -l /broad/compbio/anshul/projects/encode/rawdata/annotations/genomeSize/hg19.genome /broad/compbio/anshul/projects/roadmap/segmentations/binary/chmmDefault/coreMarks/binaryData /broad/compbio/anshul/projects/roadmap/segmentations/models/coreMarks/parallel/set2/n13 13 hg19

Model Parameters


  • Emission Parameter SVG File
  • Emission Parameter Tab-Delimited Text File

  • Transition Parameter SVG File
  • Transition Parameter Tab-Delimited Text File

  • All Model Parameters Tab-Delimited Text File

    Genome Segmentation Files

  • E001_13_coreMarks Segmentation File (Four Column Bed File)
  • E003_13_coreMarks Segmentation File (Four Column Bed File)
  • E005_13_coreMarks Segmentation File (Four Column Bed File)
  • E006_13_coreMarks Segmentation File (Four Column Bed File)
  • E008_13_coreMarks Segmentation File (Four Column Bed File)
  • E009_13_coreMarks Segmentation File (Four Column Bed File)
  • E010_13_coreMarks Segmentation File (Four Column Bed File)
  • E011_13_coreMarks Segmentation File (Four Column Bed File)
  • E014_13_coreMarks Segmentation File (Four Column Bed File)
  • E015_13_coreMarks Segmentation File (Four Column Bed File)
  • E016_13_coreMarks Segmentation File (Four Column Bed File)
  • E017_13_coreMarks Segmentation File (Four Column Bed File)
  • E019_13_coreMarks Segmentation File (Four Column Bed File)
  • E020_13_coreMarks Segmentation File (Four Column Bed File)
  • E021_13_coreMarks Segmentation File (Four Column Bed File)
  • E023_13_coreMarks Segmentation File (Four Column Bed File)
  • E025_13_coreMarks Segmentation File (Four Column Bed File)
  • E027_13_coreMarks Segmentation File (Four Column Bed File)
  • E029_13_coreMarks Segmentation File (Four Column Bed File)
  • E032_13_coreMarks Segmentation File (Four Column Bed File)
  • E036_13_coreMarks Segmentation File (Four Column Bed File)
  • E039_13_coreMarks Segmentation File (Four Column Bed File)
  • E040_13_coreMarks Segmentation File (Four Column Bed File)
  • E041_13_coreMarks Segmentation File (Four Column Bed File)
  • E045_13_coreMarks Segmentation File (Four Column Bed File)
  • E046_13_coreMarks Segmentation File (Four Column Bed File)
  • E049_13_coreMarks Segmentation File (Four Column Bed File)
  • E051_13_coreMarks Segmentation File (Four Column Bed File)
  • E054_13_coreMarks Segmentation File (Four Column Bed File)
  • E055_13_coreMarks Segmentation File (Four Column Bed File)
  • E058_13_coreMarks Segmentation File (Four Column Bed File)
  • E061_13_coreMarks Segmentation File (Four Column Bed File)
  • E062_13_coreMarks Segmentation File (Four Column Bed File)
  • E063_13_coreMarks Segmentation File (Four Column Bed File)
  • E066_13_coreMarks Segmentation File (Four Column Bed File)
  • E067_13_coreMarks Segmentation File (Four Column Bed File)
  • E068_13_coreMarks Segmentation File (Four Column Bed File)
  • E071_13_coreMarks Segmentation File (Four Column Bed File)
  • E072_13_coreMarks Segmentation File (Four Column Bed File)
  • E073_13_coreMarks Segmentation File (Four Column Bed File)
  • E075_13_coreMarks Segmentation File (Four Column Bed File)
  • E078_13_coreMarks Segmentation File (Four Column Bed File)
  • E080_13_coreMarks Segmentation File (Four Column Bed File)
  • E085_13_coreMarks Segmentation File (Four Column Bed File)
  • E088_13_coreMarks Segmentation File (Four Column Bed File)
  • E090_13_coreMarks Segmentation File (Four Column Bed File)
  • E091_13_coreMarks Segmentation File (Four Column Bed File)
  • E103_13_coreMarks Segmentation File (Four Column Bed File)
  • E111_13_coreMarks Segmentation File (Four Column Bed File)
  • E115_13_coreMarks Segmentation File (Four Column Bed File)
  • E118_13_coreMarks Segmentation File (Four Column Bed File)
  • E119_13_coreMarks Segmentation File (Four Column Bed File)
  • E120_13_coreMarks Segmentation File (Four Column Bed File)
  • E121_13_coreMarks Segmentation File (Four Column Bed File)
  • E123_13_coreMarks Segmentation File (Four Column Bed File)
  • E124_13_coreMarks Segmentation File (Four Column Bed File)
  • E125_13_coreMarks Segmentation File (Four Column Bed File)
  • E126_13_coreMarks Segmentation File (Four Column Bed File)
  • E127_13_coreMarks Segmentation File (Four Column Bed File)
  • E128_13_coreMarks Segmentation File (Four Column Bed File)

    Custom Tracks for loading into the UCSC Genome Browser:
  • E001_13_coreMarks Browser Custom Track Dense File
  • E001_13_coreMarks Browser Custom Track Expanded File
  • E003_13_coreMarks Browser Custom Track Dense File
  • E003_13_coreMarks Browser Custom Track Expanded File
  • E005_13_coreMarks Browser Custom Track Dense File
  • E005_13_coreMarks Browser Custom Track Expanded File
  • E006_13_coreMarks Browser Custom Track Dense File
  • E006_13_coreMarks Browser Custom Track Expanded File
  • E008_13_coreMarks Browser Custom Track Dense File
  • E008_13_coreMarks Browser Custom Track Expanded File
  • E009_13_coreMarks Browser Custom Track Dense File
  • E009_13_coreMarks Browser Custom Track Expanded File
  • E010_13_coreMarks Browser Custom Track Dense File
  • E010_13_coreMarks Browser Custom Track Expanded File
  • E011_13_coreMarks Browser Custom Track Dense File
  • E011_13_coreMarks Browser Custom Track Expanded File
  • E014_13_coreMarks Browser Custom Track Dense File
  • E014_13_coreMarks Browser Custom Track Expanded File
  • E015_13_coreMarks Browser Custom Track Dense File
  • E015_13_coreMarks Browser Custom Track Expanded File
  • E016_13_coreMarks Browser Custom Track Dense File
  • E016_13_coreMarks Browser Custom Track Expanded File
  • E017_13_coreMarks Browser Custom Track Dense File
  • E017_13_coreMarks Browser Custom Track Expanded File
  • E019_13_coreMarks Browser Custom Track Dense File
  • E019_13_coreMarks Browser Custom Track Expanded File
  • E020_13_coreMarks Browser Custom Track Dense File
  • E020_13_coreMarks Browser Custom Track Expanded File
  • E021_13_coreMarks Browser Custom Track Dense File
  • E021_13_coreMarks Browser Custom Track Expanded File
  • E023_13_coreMarks Browser Custom Track Dense File
  • E023_13_coreMarks Browser Custom Track Expanded File
  • E025_13_coreMarks Browser Custom Track Dense File
  • E025_13_coreMarks Browser Custom Track Expanded File
  • E027_13_coreMarks Browser Custom Track Dense File
  • E027_13_coreMarks Browser Custom Track Expanded File
  • E029_13_coreMarks Browser Custom Track Dense File
  • E029_13_coreMarks Browser Custom Track Expanded File
  • E032_13_coreMarks Browser Custom Track Dense File
  • E032_13_coreMarks Browser Custom Track Expanded File
  • E036_13_coreMarks Browser Custom Track Dense File
  • E036_13_coreMarks Browser Custom Track Expanded File
  • E039_13_coreMarks Browser Custom Track Dense File
  • E039_13_coreMarks Browser Custom Track Expanded File
  • E040_13_coreMarks Browser Custom Track Dense File
  • E040_13_coreMarks Browser Custom Track Expanded File
  • E041_13_coreMarks Browser Custom Track Dense File
  • E041_13_coreMarks Browser Custom Track Expanded File
  • E045_13_coreMarks Browser Custom Track Dense File
  • E045_13_coreMarks Browser Custom Track Expanded File
  • E046_13_coreMarks Browser Custom Track Dense File
  • E046_13_coreMarks Browser Custom Track Expanded File
  • E049_13_coreMarks Browser Custom Track Dense File
  • E049_13_coreMarks Browser Custom Track Expanded File
  • E051_13_coreMarks Browser Custom Track Dense File
  • E051_13_coreMarks Browser Custom Track Expanded File
  • E054_13_coreMarks Browser Custom Track Dense File
  • E054_13_coreMarks Browser Custom Track Expanded File
  • E055_13_coreMarks Browser Custom Track Dense File
  • E055_13_coreMarks Browser Custom Track Expanded File
  • E058_13_coreMarks Browser Custom Track Dense File
  • E058_13_coreMarks Browser Custom Track Expanded File
  • E061_13_coreMarks Browser Custom Track Dense File
  • E061_13_coreMarks Browser Custom Track Expanded File
  • E062_13_coreMarks Browser Custom Track Dense File
  • E062_13_coreMarks Browser Custom Track Expanded File
  • E063_13_coreMarks Browser Custom Track Dense File
  • E063_13_coreMarks Browser Custom Track Expanded File
  • E066_13_coreMarks Browser Custom Track Dense File
  • E066_13_coreMarks Browser Custom Track Expanded File
  • E067_13_coreMarks Browser Custom Track Dense File
  • E067_13_coreMarks Browser Custom Track Expanded File
  • E068_13_coreMarks Browser Custom Track Dense File
  • E068_13_coreMarks Browser Custom Track Expanded File
  • E071_13_coreMarks Browser Custom Track Dense File
  • E071_13_coreMarks Browser Custom Track Expanded File
  • E072_13_coreMarks Browser Custom Track Dense File
  • E072_13_coreMarks Browser Custom Track Expanded File
  • E073_13_coreMarks Browser Custom Track Dense File
  • E073_13_coreMarks Browser Custom Track Expanded File
  • E075_13_coreMarks Browser Custom Track Dense File
  • E075_13_coreMarks Browser Cu