ChromHMM Report

Input Directory: /broad/compbio/anshul/projects/roadmap/segmentations/binary/chmmDefault/coreMarks/binaryData
Output Directory: /broad/compbio/anshul/projects/roadmap/segmentations/models/coreMarks/parallel/set2/n14
Number of States: 14
Assembly: hg19
Full ChromHMM command: LearnModel -p 0 -b 200 -f /broad/compbio/anshul/projects/roadmap/segmentations/binary/chmmDefault/coreMarks/sets/set2/set2.filenames -i coreMarks -l /broad/compbio/anshul/projects/encode/rawdata/annotations/genomeSize/hg19.genome /broad/compbio/anshul/projects/roadmap/segmentations/binary/chmmDefault/coreMarks/binaryData /broad/compbio/anshul/projects/roadmap/segmentations/models/coreMarks/parallel/set2/n14 14 hg19

Model Parameters


  • Emission Parameter SVG File
  • Emission Parameter Tab-Delimited Text File

  • Transition Parameter SVG File
  • Transition Parameter Tab-Delimited Text File

  • All Model Parameters Tab-Delimited Text File

    Genome Segmentation Files

  • E001_14_coreMarks Segmentation File (Four Column Bed File)
  • E003_14_coreMarks Segmentation File (Four Column Bed File)
  • E005_14_coreMarks Segmentation File (Four Column Bed File)
  • E006_14_coreMarks Segmentation File (Four Column Bed File)
  • E008_14_coreMarks Segmentation File (Four Column Bed File)
  • E009_14_coreMarks Segmentation File (Four Column Bed File)
  • E010_14_coreMarks Segmentation File (Four Column Bed File)
  • E011_14_coreMarks Segmentation File (Four Column Bed File)
  • E014_14_coreMarks Segmentation File (Four Column Bed File)
  • E015_14_coreMarks Segmentation File (Four Column Bed File)
  • E016_14_coreMarks Segmentation File (Four Column Bed File)
  • E017_14_coreMarks Segmentation File (Four Column Bed File)
  • E019_14_coreMarks Segmentation File (Four Column Bed File)
  • E020_14_coreMarks Segmentation File (Four Column Bed File)
  • E021_14_coreMarks Segmentation File (Four Column Bed File)
  • E023_14_coreMarks Segmentation File (Four Column Bed File)
  • E025_14_coreMarks Segmentation File (Four Column Bed File)
  • E027_14_coreMarks Segmentation File (Four Column Bed File)
  • E029_14_coreMarks Segmentation File (Four Column Bed File)
  • E032_14_coreMarks Segmentation File (Four Column Bed File)
  • E036_14_coreMarks Segmentation File (Four Column Bed File)
  • E039_14_coreMarks Segmentation File (Four Column Bed File)
  • E040_14_coreMarks Segmentation File (Four Column Bed File)
  • E041_14_coreMarks Segmentation File (Four Column Bed File)
  • E045_14_coreMarks Segmentation File (Four Column Bed File)
  • E046_14_coreMarks Segmentation File (Four Column Bed File)
  • E049_14_coreMarks Segmentation File (Four Column Bed File)
  • E051_14_coreMarks Segmentation File (Four Column Bed File)
  • E054_14_coreMarks Segmentation File (Four Column Bed File)
  • E055_14_coreMarks Segmentation File (Four Column Bed File)
  • E058_14_coreMarks Segmentation File (Four Column Bed File)
  • E061_14_coreMarks Segmentation File (Four Column Bed File)
  • E062_14_coreMarks Segmentation File (Four Column Bed File)
  • E063_14_coreMarks Segmentation File (Four Column Bed File)
  • E066_14_coreMarks Segmentation File (Four Column Bed File)
  • E067_14_coreMarks Segmentation File (Four Column Bed File)
  • E068_14_coreMarks Segmentation File (Four Column Bed File)
  • E071_14_coreMarks Segmentation File (Four Column Bed File)
  • E072_14_coreMarks Segmentation File (Four Column Bed File)
  • E073_14_coreMarks Segmentation File (Four Column Bed File)
  • E075_14_coreMarks Segmentation File (Four Column Bed File)
  • E078_14_coreMarks Segmentation File (Four Column Bed File)
  • E080_14_coreMarks Segmentation File (Four Column Bed File)
  • E085_14_coreMarks Segmentation File (Four Column Bed File)
  • E088_14_coreMarks Segmentation File (Four Column Bed File)
  • E090_14_coreMarks Segmentation File (Four Column Bed File)
  • E091_14_coreMarks Segmentation File (Four Column Bed File)
  • E103_14_coreMarks Segmentation File (Four Column Bed File)
  • E111_14_coreMarks Segmentation File (Four Column Bed File)
  • E115_14_coreMarks Segmentation File (Four Column Bed File)
  • E118_14_coreMarks Segmentation File (Four Column Bed File)
  • E119_14_coreMarks Segmentation File (Four Column Bed File)
  • E120_14_coreMarks Segmentation File (Four Column Bed File)
  • E121_14_coreMarks Segmentation File (Four Column Bed File)
  • E123_14_coreMarks Segmentation File (Four Column Bed File)
  • E124_14_coreMarks Segmentation File (Four Column Bed File)
  • E125_14_coreMarks Segmentation File (Four Column Bed File)
  • E126_14_coreMarks Segmentation File (Four Column Bed File)
  • E127_14_coreMarks Segmentation File (Four Column Bed File)
  • E128_14_coreMarks Segmentation File (Four Column Bed File)

    Custom Tracks for loading into the UCSC Genome Browser:
  • E001_14_coreMarks Browser Custom Track Dense File
  • E001_14_coreMarks Browser Custom Track Expanded File
  • E003_14_coreMarks Browser Custom Track Dense File
  • E003_14_coreMarks Browser Custom Track Expanded File
  • E005_14_coreMarks Browser Custom Track Dense File
  • E005_14_coreMarks Browser Custom Track Expanded File
  • E006_14_coreMarks Browser Custom Track Dense File
  • E006_14_coreMarks Browser Custom Track Expanded File
  • E008_14_coreMarks Browser Custom Track Dense File
  • E008_14_coreMarks Browser Custom Track Expanded File
  • E009_14_coreMarks Browser Custom Track Dense File
  • E009_14_coreMarks Browser Custom Track Expanded File
  • E010_14_coreMarks Browser Custom Track Dense File
  • E010_14_coreMarks Browser Custom Track Expanded File
  • E011_14_coreMarks Browser Custom Track Dense File
  • E011_14_coreMarks Browser Custom Track Expanded File
  • E014_14_coreMarks Browser Custom Track Dense File
  • E014_14_coreMarks Browser Custom Track Expanded File
  • E015_14_coreMarks Browser Custom Track Dense File
  • E015_14_coreMarks Browser Custom Track Expanded File
  • E016_14_coreMarks Browser Custom Track Dense File
  • E016_14_coreMarks Browser Custom Track Expanded File
  • E017_14_coreMarks Browser Custom Track Dense File
  • E017_14_coreMarks Browser Custom Track Expanded File
  • E019_14_coreMarks Browser Custom Track Dense File
  • E019_14_coreMarks Browser Custom Track Expanded File
  • E020_14_coreMarks Browser Custom Track Dense File
  • E020_14_coreMarks Browser Custom Track Expanded File
  • E021_14_coreMarks Browser Custom Track Dense File
  • E021_14_coreMarks Browser Custom Track Expanded File
  • E023_14_coreMarks Browser Custom Track Dense File
  • E023_14_coreMarks Browser Custom Track Expanded File
  • E025_14_coreMarks Browser Custom Track Dense File
  • E025_14_coreMarks Browser Custom Track Expanded File
  • E027_14_coreMarks Browser Custom Track Dense File
  • E027_14_coreMarks Browser Custom Track Expanded File
  • E029_14_coreMarks Browser Custom Track Dense File
  • E029_14_coreMarks Browser Custom Track Expanded File
  • E032_14_coreMarks Browser Custom Track Dense File
  • E032_14_coreMarks Browser Custom Track Expanded File
  • E036_14_coreMarks Browser Custom Track Dense File
  • E036_14_coreMarks Browser Custom Track Expanded File
  • E039_14_coreMarks Browser Custom Track Dense File
  • E039_14_coreMarks Browser Custom Track Expanded File
  • E040_14_coreMarks Browser Custom Track Dense File
  • E040_14_coreMarks Browser Custom Track Expanded File
  • E041_14_coreMarks Browser Custom Track Dense File
  • E041_14_coreMarks Browser Custom Track Expanded File
  • E045_14_coreMarks Browser Custom Track Dense File
  • E045_14_coreMarks Browser Custom Track Expanded File
  • E046_14_coreMarks Browser Custom Track Dense File
  • E046_14_coreMarks Browser Custom Track Expanded File
  • E049_14_coreMarks Browser Custom Track Dense File
  • E049_14_coreMarks Browser Custom Track Expanded File
  • E051_14_coreMarks Browser Custom Track Dense File
  • E051_14_coreMarks Browser Custom Track Expanded File
  • E054_14_coreMarks Browser Custom Track Dense File
  • E054_14_coreMarks Browser Custom Track Expanded File
  • E055_14_coreMarks Browser Custom Track Dense File
  • E055_14_coreMarks Browser Custom Track Expanded File
  • E058_14_coreMarks Browser Custom Track Dense File
  • E058_14_coreMarks Browser Custom Track Expanded File
  • E061_14_coreMarks Browser Custom Track Dense File
  • E061_14_coreMarks Browser Custom Track Expanded File
  • E062_14_coreMarks Browser Custom Track Dense File
  • E062_14_coreMarks Browser Custom Track Expanded File
  • E063_14_coreMarks Browser Custom Track Dense File
  • E063_14_coreMarks Browser Custom Track Expanded File
  • E066_14_coreMarks Browser Custom Track Dense File
  • E066_14_coreMarks Browser Custom Track Expanded File
  • E067_14_coreMarks Browser Custom Track Dense File
  • E067_14_coreMarks Browser Custom Track Expanded File
  • E068_14_coreMarks Browser Custom Track Dense File
  • E068_14_coreMarks Browser Custom Track Expanded File
  • E071_14_coreMarks Browser Custom Track Dense File
  • E071_14_coreMarks Browser Custom Track Expanded File
  • E072_14_coreMarks Browser Custom Track Dense File
  • E072_14_coreMarks Browser Custom Track Expanded File
  • E073_14_coreMarks Browser Custom Track Dense File
  • E073_14_coreMarks Browser Custom Track Expanded File
  • E075_14_coreMarks Browser Custom Track Dense File
  • E075_14_coreMarks Browser Cu