ChromHMM Report

Input Directory: /broad/compbio/anshul/projects/roadmap/segmentations/binary/chmmDefault/coreMarks/binaryData
Output Directory: /broad/compbio/anshul/projects/roadmap/segmentations/models/coreMarks/parallel/set2/n16
Number of States: 16
Assembly: hg19
Full ChromHMM command: LearnModel -p 0 -b 200 -f /broad/compbio/anshul/projects/roadmap/segmentations/binary/chmmDefault/coreMarks/sets/set2/set2.filenames -i coreMarks -l /broad/compbio/anshul/projects/encode/rawdata/annotations/genomeSize/hg19.genome /broad/compbio/anshul/projects/roadmap/segmentations/binary/chmmDefault/coreMarks/binaryData /broad/compbio/anshul/projects/roadmap/segmentations/models/coreMarks/parallel/set2/n16 16 hg19

Model Parameters


  • Emission Parameter SVG File
  • Emission Parameter Tab-Delimited Text File

  • Transition Parameter SVG File
  • Transition Parameter Tab-Delimited Text File

  • All Model Parameters Tab-Delimited Text File

    Genome Segmentation Files

  • E001_16_coreMarks Segmentation File (Four Column Bed File)
  • E003_16_coreMarks Segmentation File (Four Column Bed File)
  • E005_16_coreMarks Segmentation File (Four Column Bed File)
  • E006_16_coreMarks Segmentation File (Four Column Bed File)
  • E008_16_coreMarks Segmentation File (Four Column Bed File)
  • E009_16_coreMarks Segmentation File (Four Column Bed File)
  • E010_16_coreMarks Segmentation File (Four Column Bed File)
  • E011_16_coreMarks Segmentation File (Four Column Bed File)
  • E014_16_coreMarks Segmentation File (Four Column Bed File)
  • E015_16_coreMarks Segmentation File (Four Column Bed File)
  • E016_16_coreMarks Segmentation File (Four Column Bed File)
  • E017_16_coreMarks Segmentation File (Four Column Bed File)
  • E019_16_coreMarks Segmentation File (Four Column Bed File)
  • E020_16_coreMarks Segmentation File (Four Column Bed File)
  • E021_16_coreMarks Segmentation File (Four Column Bed File)
  • E023_16_coreMarks Segmentation File (Four Column Bed File)
  • E025_16_coreMarks Segmentation File (Four Column Bed File)
  • E027_16_coreMarks Segmentation File (Four Column Bed File)
  • E029_16_coreMarks Segmentation File (Four Column Bed File)
  • E032_16_coreMarks Segmentation File (Four Column Bed File)
  • E036_16_coreMarks Segmentation File (Four Column Bed File)
  • E039_16_coreMarks Segmentation File (Four Column Bed File)
  • E040_16_coreMarks Segmentation File (Four Column Bed File)
  • E041_16_coreMarks Segmentation File (Four Column Bed File)
  • E045_16_coreMarks Segmentation File (Four Column Bed File)
  • E046_16_coreMarks Segmentation File (Four Column Bed File)
  • E049_16_coreMarks Segmentation File (Four Column Bed File)
  • E051_16_coreMarks Segmentation File (Four Column Bed File)
  • E054_16_coreMarks Segmentation File (Four Column Bed File)
  • E055_16_coreMarks Segmentation File (Four Column Bed File)
  • E058_16_coreMarks Segmentation File (Four Column Bed File)
  • E061_16_coreMarks Segmentation File (Four Column Bed File)
  • E062_16_coreMarks Segmentation File (Four Column Bed File)
  • E063_16_coreMarks Segmentation File (Four Column Bed File)
  • E066_16_coreMarks Segmentation File (Four Column Bed File)
  • E067_16_coreMarks Segmentation File (Four Column Bed File)
  • E068_16_coreMarks Segmentation File (Four Column Bed File)
  • E071_16_coreMarks Segmentation File (Four Column Bed File)
  • E072_16_coreMarks Segmentation File (Four Column Bed File)
  • E073_16_coreMarks Segmentation File (Four Column Bed File)
  • E075_16_coreMarks Segmentation File (Four Column Bed File)
  • E078_16_coreMarks Segmentation File (Four Column Bed File)
  • E080_16_coreMarks Segmentation File (Four Column Bed File)
  • E085_16_coreMarks Segmentation File (Four Column Bed File)
  • E088_16_coreMarks Segmentation File (Four Column Bed File)
  • E090_16_coreMarks Segmentation File (Four Column Bed File)
  • E091_16_coreMarks Segmentation File (Four Column Bed File)
  • E103_16_coreMarks Segmentation File (Four Column Bed File)
  • E111_16_coreMarks Segmentation File (Four Column Bed File)
  • E115_16_coreMarks Segmentation File (Four Column Bed File)
  • E118_16_coreMarks Segmentation File (Four Column Bed File)
  • E119_16_coreMarks Segmentation File (Four Column Bed File)
  • E120_16_coreMarks Segmentation File (Four Column Bed File)
  • E121_16_coreMarks Segmentation File (Four Column Bed File)
  • E123_16_coreMarks Segmentation File (Four Column Bed File)
  • E124_16_coreMarks Segmentation File (Four Column Bed File)
  • E125_16_coreMarks Segmentation File (Four Column Bed File)
  • E126_16_coreMarks Segmentation File (Four Column Bed File)
  • E127_16_coreMarks Segmentation File (Four Column Bed File)
  • E128_16_coreMarks Segmentation File (Four Column Bed File)

    Custom Tracks for loading into the UCSC Genome Browser:
  • E001_16_coreMarks Browser Custom Track Dense File
  • E001_16_coreMarks Browser Custom Track Expanded File
  • E003_16_coreMarks Browser Custom Track Dense File
  • E003_16_coreMarks Browser Custom Track Expanded File
  • E005_16_coreMarks Browser Custom Track Dense File
  • E005_16_coreMarks Browser Custom Track Expanded File
  • E006_16_coreMarks Browser Custom Track Dense File
  • E006_16_coreMarks Browser Custom Track Expanded File
  • E008_16_coreMarks Browser Custom Track Dense File
  • E008_16_coreMarks Browser Custom Track Expanded File
  • E009_16_coreMarks Browser Custom Track Dense File
  • E009_16_coreMarks Browser Custom Track Expanded File
  • E010_16_coreMarks Browser Custom Track Dense File
  • E010_16_coreMarks Browser Custom Track Expanded File
  • E011_16_coreMarks Browser Custom Track Dense File
  • E011_16_coreMarks Browser Custom Track Expanded File
  • E014_16_coreMarks Browser Custom Track Dense File
  • E014_16_coreMarks Browser Custom Track Expanded File
  • E015_16_coreMarks Browser Custom Track Dense File
  • E015_16_coreMarks Browser Custom Track Expanded File
  • E016_16_coreMarks Browser Custom Track Dense File
  • E016_16_coreMarks Browser Custom Track Expanded File
  • E017_16_coreMarks Browser Custom Track Dense File
  • E017_16_coreMarks Browser Custom Track Expanded File
  • E019_16_coreMarks Browser Custom Track Dense File
  • E019_16_coreMarks Browser Custom Track Expanded File
  • E020_16_coreMarks Browser Custom Track Dense File
  • E020_16_coreMarks Browser Custom Track Expanded File
  • E021_16_coreMarks Browser Custom Track Dense File
  • E021_16_coreMarks Browser Custom Track Expanded File
  • E023_16_coreMarks Browser Custom Track Dense File
  • E023_16_coreMarks Browser Custom Track Expanded File
  • E025_16_coreMarks Browser Custom Track Dense File
  • E025_16_coreMarks Browser Custom Track Expanded File
  • E027_16_coreMarks Browser Custom Track Dense File
  • E027_16_coreMarks Browser Custom Track Expanded File
  • E029_16_coreMarks Browser Custom Track Dense File
  • E029_16_coreMarks Browser Custom Track Expanded File
  • E032_16_coreMarks Browser Custom Track Dense File
  • E032_16_coreMarks Browser Custom Track Expanded File
  • E036_16_coreMarks Browser Custom Track Dense File
  • E036_16_coreMarks Browser Custom Track Expanded File
  • E039_16_coreMarks Browser Custom Track Dense File
  • E039_16_coreMarks Browser Custom Track Expanded File
  • E040_16_coreMarks Browser Custom Track Dense File
  • E040_16_coreMarks Browser Custom Track Expanded File
  • E041_16_coreMarks Browser Custom Track Dense File
  • E041_16_coreMarks Browser Custom Track Expanded File
  • E045_16_coreMarks Browser Custom Track Dense File
  • E045_16_coreMarks Browser Custom Track Expanded File
  • E046_16_coreMarks Browser Custom Track Dense File
  • E046_16_coreMarks Browser Custom Track Expanded File
  • E049_16_coreMarks Browser Custom Track Dense File
  • E049_16_coreMarks Browser Custom Track Expanded File
  • E051_16_coreMarks Browser Custom Track Dense File
  • E051_16_coreMarks Browser Custom Track Expanded File
  • E054_16_coreMarks Browser Custom Track Dense File
  • E054_16_coreMarks Browser Custom Track Expanded File
  • E055_16_coreMarks Browser Custom Track Dense File
  • E055_16_coreMarks Browser Custom Track Expanded File
  • E058_16_coreMarks Browser Custom Track Dense File
  • E058_16_coreMarks Browser Custom Track Expanded File
  • E061_16_coreMarks Browser Custom Track Dense File
  • E061_16_coreMarks Browser Custom Track Expanded File
  • E062_16_coreMarks Browser Custom Track Dense File
  • E062_16_coreMarks Browser Custom Track Expanded File
  • E063_16_coreMarks Browser Custom Track Dense File
  • E063_16_coreMarks Browser Custom Track Expanded File
  • E066_16_coreMarks Browser Custom Track Dense File
  • E066_16_coreMarks Browser Custom Track Expanded File
  • E067_16_coreMarks Browser Custom Track Dense File
  • E067_16_coreMarks Browser Custom Track Expanded File
  • E068_16_coreMarks Browser Custom Track Dense File
  • E068_16_coreMarks Browser Custom Track Expanded File
  • E071_16_coreMarks Browser Custom Track Dense File
  • E071_16_coreMarks Browser Custom Track Expanded File
  • E072_16_coreMarks Browser Custom Track Dense File
  • E072_16_coreMarks Browser Custom Track Expanded File
  • E073_16_coreMarks Browser Custom Track Dense File
  • E073_16_coreMarks Browser Custom Track Expanded File
  • E075_16_coreMarks Browser Custom Track Dense File
  • E075_16_coreMarks Browser Cu