ChromHMM Report

Input Directory: /broad/compbio/anshul/projects/roadmap/segmentations/binary/chmmDefault/coreMarks/binaryData
Output Directory: /broad/compbio/anshul/projects/roadmap/segmentations/models/coreMarks/parallel/set2/n17
Number of States: 17
Assembly: hg19
Full ChromHMM command: LearnModel -p 0 -b 200 -f /broad/compbio/anshul/projects/roadmap/segmentations/binary/chmmDefault/coreMarks/sets/set2/set2.filenames -i coreMarks -l /broad/compbio/anshul/projects/encode/rawdata/annotations/genomeSize/hg19.genome /broad/compbio/anshul/projects/roadmap/segmentations/binary/chmmDefault/coreMarks/binaryData /broad/compbio/anshul/projects/roadmap/segmentations/models/coreMarks/parallel/set2/n17 17 hg19

Model Parameters


  • Emission Parameter SVG File
  • Emission Parameter Tab-Delimited Text File

  • Transition Parameter SVG File
  • Transition Parameter Tab-Delimited Text File

  • All Model Parameters Tab-Delimited Text File

    Genome Segmentation Files

  • E001_17_coreMarks Segmentation File (Four Column Bed File)
  • E003_17_coreMarks Segmentation File (Four Column Bed File)
  • E005_17_coreMarks Segmentation File (Four Column Bed File)
  • E006_17_coreMarks Segmentation File (Four Column Bed File)
  • E008_17_coreMarks Segmentation File (Four Column Bed File)
  • E009_17_coreMarks Segmentation File (Four Column Bed File)
  • E010_17_coreMarks Segmentation File (Four Column Bed File)
  • E011_17_coreMarks Segmentation File (Four Column Bed File)
  • E014_17_coreMarks Segmentation File (Four Column Bed File)
  • E015_17_coreMarks Segmentation File (Four Column Bed File)
  • E016_17_coreMarks Segmentation File (Four Column Bed File)
  • E017_17_coreMarks Segmentation File (Four Column Bed File)
  • E019_17_coreMarks Segmentation File (Four Column Bed File)
  • E020_17_coreMarks Segmentation File (Four Column Bed File)
  • E021_17_coreMarks Segmentation File (Four Column Bed File)
  • E023_17_coreMarks Segmentation File (Four Column Bed File)
  • E025_17_coreMarks Segmentation File (Four Column Bed File)
  • E027_17_coreMarks Segmentation File (Four Column Bed File)
  • E029_17_coreMarks Segmentation File (Four Column Bed File)
  • E032_17_coreMarks Segmentation File (Four Column Bed File)
  • E036_17_coreMarks Segmentation File (Four Column Bed File)
  • E039_17_coreMarks Segmentation File (Four Column Bed File)
  • E040_17_coreMarks Segmentation File (Four Column Bed File)
  • E041_17_coreMarks Segmentation File (Four Column Bed File)
  • E045_17_coreMarks Segmentation File (Four Column Bed File)
  • E046_17_coreMarks Segmentation File (Four Column Bed File)
  • E049_17_coreMarks Segmentation File (Four Column Bed File)
  • E051_17_coreMarks Segmentation File (Four Column Bed File)
  • E054_17_coreMarks Segmentation File (Four Column Bed File)
  • E055_17_coreMarks Segmentation File (Four Column Bed File)
  • E058_17_coreMarks Segmentation File (Four Column Bed File)
  • E061_17_coreMarks Segmentation File (Four Column Bed File)
  • E062_17_coreMarks Segmentation File (Four Column Bed File)
  • E063_17_coreMarks Segmentation File (Four Column Bed File)
  • E066_17_coreMarks Segmentation File (Four Column Bed File)
  • E067_17_coreMarks Segmentation File (Four Column Bed File)
  • E068_17_coreMarks Segmentation File (Four Column Bed File)
  • E071_17_coreMarks Segmentation File (Four Column Bed File)
  • E072_17_coreMarks Segmentation File (Four Column Bed File)
  • E073_17_coreMarks Segmentation File (Four Column Bed File)
  • E075_17_coreMarks Segmentation File (Four Column Bed File)
  • E078_17_coreMarks Segmentation File (Four Column Bed File)
  • E080_17_coreMarks Segmentation File (Four Column Bed File)
  • E085_17_coreMarks Segmentation File (Four Column Bed File)
  • E088_17_coreMarks Segmentation File (Four Column Bed File)
  • E090_17_coreMarks Segmentation File (Four Column Bed File)
  • E091_17_coreMarks Segmentation File (Four Column Bed File)
  • E103_17_coreMarks Segmentation File (Four Column Bed File)
  • E111_17_coreMarks Segmentation File (Four Column Bed File)
  • E115_17_coreMarks Segmentation File (Four Column Bed File)
  • E118_17_coreMarks Segmentation File (Four Column Bed File)
  • E119_17_coreMarks Segmentation File (Four Column Bed File)
  • E120_17_coreMarks Segmentation File (Four Column Bed File)
  • E121_17_coreMarks Segmentation File (Four Column Bed File)
  • E123_17_coreMarks Segmentation File (Four Column Bed File)
  • E124_17_coreMarks Segmentation File (Four Column Bed File)
  • E125_17_coreMarks Segmentation File (Four Column Bed File)
  • E126_17_coreMarks Segmentation File (Four Column Bed File)
  • E127_17_coreMarks Segmentation File (Four Column Bed File)
  • E128_17_coreMarks Segmentation File (Four Column Bed File)

    Custom Tracks for loading into the UCSC Genome Browser:
  • E001_17_coreMarks Browser Custom Track Dense File
  • E001_17_coreMarks Browser Custom Track Expanded File
  • E003_17_coreMarks Browser Custom Track Dense File
  • E003_17_coreMarks Browser Custom Track Expanded File
  • E005_17_coreMarks Browser Custom Track Dense File
  • E005_17_coreMarks Browser Custom Track Expanded File
  • E006_17_coreMarks Browser Custom Track Dense File
  • E006_17_coreMarks Browser Custom Track Expanded File
  • E008_17_coreMarks Browser Custom Track Dense File
  • E008_17_coreMarks Browser Custom Track Expanded File
  • E009_17_coreMarks Browser Custom Track Dense File
  • E009_17_coreMarks Browser Custom Track Expanded File
  • E010_17_coreMarks Browser Custom Track Dense File
  • E010_17_coreMarks Browser Custom Track Expanded File
  • E011_17_coreMarks Browser Custom Track Dense File
  • E011_17_coreMarks Browser Custom Track Expanded File
  • E014_17_coreMarks Browser Custom Track Dense File
  • E014_17_coreMarks Browser Custom Track Expanded File
  • E015_17_coreMarks Browser Custom Track Dense File
  • E015_17_coreMarks Browser Custom Track Expanded File
  • E016_17_coreMarks Browser Custom Track Dense File
  • E016_17_coreMarks Browser Custom Track Expanded File
  • E017_17_coreMarks Browser Custom Track Dense File
  • E017_17_coreMarks Browser Custom Track Expanded File
  • E019_17_coreMarks Browser Custom Track Dense File
  • E019_17_coreMarks Browser Custom Track Expanded File
  • E020_17_coreMarks Browser Custom Track Dense File
  • E020_17_coreMarks Browser Custom Track Expanded File
  • E021_17_coreMarks Browser Custom Track Dense File
  • E021_17_coreMarks Browser Custom Track Expanded File
  • E023_17_coreMarks Browser Custom Track Dense File
  • E023_17_coreMarks Browser Custom Track Expanded File
  • E025_17_coreMarks Browser Custom Track Dense File
  • E025_17_coreMarks Browser Custom Track Expanded File
  • E027_17_coreMarks Browser Custom Track Dense File
  • E027_17_coreMarks Browser Custom Track Expanded File
  • E029_17_coreMarks Browser Custom Track Dense File
  • E029_17_coreMarks Browser Custom Track Expanded File
  • E032_17_coreMarks Browser Custom Track Dense File
  • E032_17_coreMarks Browser Custom Track Expanded File
  • E036_17_coreMarks Browser Custom Track Dense File
  • E036_17_coreMarks Browser Custom Track Expanded File
  • E039_17_coreMarks Browser Custom Track Dense File
  • E039_17_coreMarks Browser Custom Track Expanded File
  • E040_17_coreMarks Browser Custom Track Dense File
  • E040_17_coreMarks Browser Custom Track Expanded File
  • E041_17_coreMarks Browser Custom Track Dense File
  • E041_17_coreMarks Browser Custom Track Expanded File
  • E045_17_coreMarks Browser Custom Track Dense File
  • E045_17_coreMarks Browser Custom Track Expanded File
  • E046_17_coreMarks Browser Custom Track Dense File
  • E046_17_coreMarks Browser Custom Track Expanded File
  • E049_17_coreMarks Browser Custom Track Dense File
  • E049_17_coreMarks Browser Custom Track Expanded File
  • E051_17_coreMarks Browser Custom Track Dense File
  • E051_17_coreMarks Browser Custom Track Expanded File
  • E054_17_coreMarks Browser Custom Track Dense File
  • E054_17_coreMarks Browser Custom Track Expanded File
  • E055_17_coreMarks Browser Custom Track Dense File
  • E055_17_coreMarks Browser Custom Track Expanded File
  • E058_17_coreMarks Browser Custom Track Dense File
  • E058_17_coreMarks Browser Custom Track Expanded File
  • E061_17_coreMarks Browser Custom Track Dense File
  • E061_17_coreMarks Browser Custom Track Expanded File
  • E062_17_coreMarks Browser Custom Track Dense File
  • E062_17_coreMarks Browser Custom Track Expanded File
  • E063_17_coreMarks Browser Custom Track Dense File
  • E063_17_coreMarks Browser Custom Track Expanded File
  • E066_17_coreMarks Browser Custom Track Dense File
  • E066_17_coreMarks Browser Custom Track Expanded File
  • E067_17_coreMarks Browser Custom Track Dense File
  • E067_17_coreMarks Browser Custom Track Expanded File
  • E068_17_coreMarks Browser Custom Track Dense File
  • E068_17_coreMarks Browser Custom Track Expanded File
  • E071_17_coreMarks Browser Custom Track Dense File
  • E071_17_coreMarks Browser Custom Track Expanded File
  • E072_17_coreMarks Browser Custom Track Dense File
  • E072_17_coreMarks Browser Custom Track Expanded File
  • E073_17_coreMarks Browser Custom Track Dense File
  • E073_17_coreMarks Browser Custom Track Expanded File
  • E075_17_coreMarks Browser Custom Track Dense File
  • E075_17_coreMarks Browser Cu