ChromHMM Report

Input Directory: /broad/compbio/anshul/projects/roadmap/segmentations/binary/chmmDefault/coreMarks/binaryData
Output Directory: /broad/compbio/anshul/projects/roadmap/segmentations/models/coreMarks/parallel/set2/n18
Number of States: 18
Assembly: hg19
Full ChromHMM command: LearnModel -p 0 -b 200 -f /broad/compbio/anshul/projects/roadmap/segmentations/binary/chmmDefault/coreMarks/sets/set2/set2.filenames -i coreMarks -l /broad/compbio/anshul/projects/encode/rawdata/annotations/genomeSize/hg19.genome /broad/compbio/anshul/projects/roadmap/segmentations/binary/chmmDefault/coreMarks/binaryData /broad/compbio/anshul/projects/roadmap/segmentations/models/coreMarks/parallel/set2/n18 18 hg19

Model Parameters


  • Emission Parameter SVG File
  • Emission Parameter Tab-Delimited Text File

  • Transition Parameter SVG File
  • Transition Parameter Tab-Delimited Text File

  • All Model Parameters Tab-Delimited Text File

    Genome Segmentation Files

  • E001_18_coreMarks Segmentation File (Four Column Bed File)
  • E003_18_coreMarks Segmentation File (Four Column Bed File)
  • E005_18_coreMarks Segmentation File (Four Column Bed File)
  • E006_18_coreMarks Segmentation File (Four Column Bed File)
  • E008_18_coreMarks Segmentation File (Four Column Bed File)
  • E009_18_coreMarks Segmentation File (Four Column Bed File)
  • E010_18_coreMarks Segmentation File (Four Column Bed File)
  • E011_18_coreMarks Segmentation File (Four Column Bed File)
  • E014_18_coreMarks Segmentation File (Four Column Bed File)
  • E015_18_coreMarks Segmentation File (Four Column Bed File)
  • E016_18_coreMarks Segmentation File (Four Column Bed File)
  • E017_18_coreMarks Segmentation File (Four Column Bed File)
  • E019_18_coreMarks Segmentation File (Four Column Bed File)
  • E020_18_coreMarks Segmentation File (Four Column Bed File)
  • E021_18_coreMarks Segmentation File (Four Column Bed File)
  • E023_18_coreMarks Segmentation File (Four Column Bed File)
  • E025_18_coreMarks Segmentation File (Four Column Bed File)
  • E027_18_coreMarks Segmentation File (Four Column Bed File)
  • E029_18_coreMarks Segmentation File (Four Column Bed File)
  • E032_18_coreMarks Segmentation File (Four Column Bed File)
  • E036_18_coreMarks Segmentation File (Four Column Bed File)
  • E039_18_coreMarks Segmentation File (Four Column Bed File)
  • E040_18_coreMarks Segmentation File (Four Column Bed File)
  • E041_18_coreMarks Segmentation File (Four Column Bed File)
  • E045_18_coreMarks Segmentation File (Four Column Bed File)
  • E046_18_coreMarks Segmentation File (Four Column Bed File)
  • E049_18_coreMarks Segmentation File (Four Column Bed File)
  • E051_18_coreMarks Segmentation File (Four Column Bed File)
  • E054_18_coreMarks Segmentation File (Four Column Bed File)
  • E055_18_coreMarks Segmentation File (Four Column Bed File)
  • E058_18_coreMarks Segmentation File (Four Column Bed File)
  • E061_18_coreMarks Segmentation File (Four Column Bed File)
  • E062_18_coreMarks Segmentation File (Four Column Bed File)
  • E063_18_coreMarks Segmentation File (Four Column Bed File)
  • E066_18_coreMarks Segmentation File (Four Column Bed File)
  • E067_18_coreMarks Segmentation File (Four Column Bed File)
  • E068_18_coreMarks Segmentation File (Four Column Bed File)
  • E071_18_coreMarks Segmentation File (Four Column Bed File)
  • E072_18_coreMarks Segmentation File (Four Column Bed File)
  • E073_18_coreMarks Segmentation File (Four Column Bed File)
  • E075_18_coreMarks Segmentation File (Four Column Bed File)
  • E078_18_coreMarks Segmentation File (Four Column Bed File)
  • E080_18_coreMarks Segmentation File (Four Column Bed File)
  • E085_18_coreMarks Segmentation File (Four Column Bed File)
  • E088_18_coreMarks Segmentation File (Four Column Bed File)
  • E090_18_coreMarks Segmentation File (Four Column Bed File)
  • E091_18_coreMarks Segmentation File (Four Column Bed File)
  • E103_18_coreMarks Segmentation File (Four Column Bed File)
  • E111_18_coreMarks Segmentation File (Four Column Bed File)
  • E115_18_coreMarks Segmentation File (Four Column Bed File)
  • E118_18_coreMarks Segmentation File (Four Column Bed File)
  • E119_18_coreMarks Segmentation File (Four Column Bed File)
  • E120_18_coreMarks Segmentation File (Four Column Bed File)
  • E121_18_coreMarks Segmentation File (Four Column Bed File)
  • E123_18_coreMarks Segmentation File (Four Column Bed File)
  • E124_18_coreMarks Segmentation File (Four Column Bed File)
  • E125_18_coreMarks Segmentation File (Four Column Bed File)
  • E126_18_coreMarks Segmentation File (Four Column Bed File)
  • E127_18_coreMarks Segmentation File (Four Column Bed File)
  • E128_18_coreMarks Segmentation File (Four Column Bed File)

    Custom Tracks for loading into the UCSC Genome Browser:
  • E001_18_coreMarks Browser Custom Track Dense File
  • E001_18_coreMarks Browser Custom Track Expanded File
  • E003_18_coreMarks Browser Custom Track Dense File
  • E003_18_coreMarks Browser Custom Track Expanded File
  • E005_18_coreMarks Browser Custom Track Dense File
  • E005_18_coreMarks Browser Custom Track Expanded File
  • E006_18_coreMarks Browser Custom Track Dense File
  • E006_18_coreMarks Browser Custom Track Expanded File
  • E008_18_coreMarks Browser Custom Track Dense File
  • E008_18_coreMarks Browser Custom Track Expanded File
  • E009_18_coreMarks Browser Custom Track Dense File
  • E009_18_coreMarks Browser Custom Track Expanded File
  • E010_18_coreMarks Browser Custom Track Dense File
  • E010_18_coreMarks Browser Custom Track Expanded File
  • E011_18_coreMarks Browser Custom Track Dense File
  • E011_18_coreMarks Browser Custom Track Expanded File
  • E014_18_coreMarks Browser Custom Track Dense File
  • E014_18_coreMarks Browser Custom Track Expanded File
  • E015_18_coreMarks Browser Custom Track Dense File
  • E015_18_coreMarks Browser Custom Track Expanded File
  • E016_18_coreMarks Browser Custom Track Dense File
  • E016_18_coreMarks Browser Custom Track Expanded File
  • E017_18_coreMarks Browser Custom Track Dense File
  • E017_18_coreMarks Browser Custom Track Expanded File
  • E019_18_coreMarks Browser Custom Track Dense File
  • E019_18_coreMarks Browser Custom Track Expanded File
  • E020_18_coreMarks Browser Custom Track Dense File
  • E020_18_coreMarks Browser Custom Track Expanded File
  • E021_18_coreMarks Browser Custom Track Dense File
  • E021_18_coreMarks Browser Custom Track Expanded File
  • E023_18_coreMarks Browser Custom Track Dense File
  • E023_18_coreMarks Browser Custom Track Expanded File
  • E025_18_coreMarks Browser Custom Track Dense File
  • E025_18_coreMarks Browser Custom Track Expanded File
  • E027_18_coreMarks Browser Custom Track Dense File
  • E027_18_coreMarks Browser Custom Track Expanded File
  • E029_18_coreMarks Browser Custom Track Dense File
  • E029_18_coreMarks Browser Custom Track Expanded File
  • E032_18_coreMarks Browser Custom Track Dense File
  • E032_18_coreMarks Browser Custom Track Expanded File
  • E036_18_coreMarks Browser Custom Track Dense File
  • E036_18_coreMarks Browser Custom Track Expanded File
  • E039_18_coreMarks Browser Custom Track Dense File
  • E039_18_coreMarks Browser Custom Track Expanded File
  • E040_18_coreMarks Browser Custom Track Dense File
  • E040_18_coreMarks Browser Custom Track Expanded File
  • E041_18_coreMarks Browser Custom Track Dense File
  • E041_18_coreMarks Browser Custom Track Expanded File
  • E045_18_coreMarks Browser Custom Track Dense File
  • E045_18_coreMarks Browser Custom Track Expanded File
  • E046_18_coreMarks Browser Custom Track Dense File
  • E046_18_coreMarks Browser Custom Track Expanded File
  • E049_18_coreMarks Browser Custom Track Dense File
  • E049_18_coreMarks Browser Custom Track Expanded File
  • E051_18_coreMarks Browser Custom Track Dense File
  • E051_18_coreMarks Browser Custom Track Expanded File
  • E054_18_coreMarks Browser Custom Track Dense File
  • E054_18_coreMarks Browser Custom Track Expanded File
  • E055_18_coreMarks Browser Custom Track Dense File
  • E055_18_coreMarks Browser Custom Track Expanded File
  • E058_18_coreMarks Browser Custom Track Dense File
  • E058_18_coreMarks Browser Custom Track Expanded File
  • E061_18_coreMarks Browser Custom Track Dense File
  • E061_18_coreMarks Browser Custom Track Expanded File
  • E062_18_coreMarks Browser Custom Track Dense File
  • E062_18_coreMarks Browser Custom Track Expanded File
  • E063_18_coreMarks Browser Custom Track Dense File
  • E063_18_coreMarks Browser Custom Track Expanded File
  • E066_18_coreMarks Browser Custom Track Dense File
  • E066_18_coreMarks Browser Custom Track Expanded File
  • E067_18_coreMarks Browser Custom Track Dense File
  • E067_18_coreMarks Browser Custom Track Expanded File
  • E068_18_coreMarks Browser Custom Track Dense File
  • E068_18_coreMarks Browser Custom Track Expanded File
  • E071_18_coreMarks Browser Custom Track Dense File
  • E071_18_coreMarks Browser Custom Track Expanded File
  • E072_18_coreMarks Browser Custom Track Dense File
  • E072_18_coreMarks Browser Custom Track Expanded File
  • E073_18_coreMarks Browser Custom Track Dense File
  • E073_18_coreMarks Browser Custom Track Expanded File
  • E075_18_coreMarks Browser Custom Track Dense File
  • E075_18_coreMarks Browser Cu