state (Emission order)	Genome %	Rpt_All_DNA.bed.gz	Rpt_All_LINE.bed.gz	Rpt_All_LTR.bed.gz	Rpt_All_LowCmplx.bed.gz	Rpt_All_Other.bed.gz	Rpt_All_RC.bed.gz	Rpt_All_RNA.bed.gz	Rpt_All_SINE.bed.gz	Rpt_All_Satellite.bed.gz	Rpt_All_Simple.bed.gz	Rpt_All_Unknown.bed.gz	Rpt_DNA_DNA.bed.gz	Rpt_DNA_Merlin.bed.gz	Rpt_DNA_MuDR.bed.gz	Rpt_DNA_PiggyBac.bed.gz	Rpt_DNA_TcMar-Mariner.bed.gz	Rpt_DNA_TcMar-Tc2.bed.gz	Rpt_DNA_TcMar-Tigger.bed.gz	Rpt_DNA_TcMar.bed.gz	Rpt_DNA_hAT-Blackjack.bed.gz	Rpt_DNA_hAT-Charlie.bed.gz	Rpt_DNA_hAT-Tip100.bed.gz	Rpt_DNA_hAT.bed.gz	Rpt_LINE_CR1.bed.gz	Rpt_LINE_Dong-R4.bed.gz	Rpt_LINE_L1.bed.gz	Rpt_LINE_L2.bed.gz	Rpt_LINE_Penelope.bed.gz	Rpt_LINE_RTE-BovB.bed.gz	Rpt_LINE_RTE.bed.gz	Rpt_LTR_ERV.bed.gz	Rpt_LTR_ERV1.bed.gz	Rpt_LTR_ERVK.bed.gz	Rpt_LTR_ERVL-MaLR.bed.gz	Rpt_LTR_ERVL.bed.gz	Rpt_LTR_Gypsy.bed.gz	Rpt_LTR_LTR.bed.gz	Rpt_RNA_RNA.bed.gz	Rpt_RNA_TcMar-Mariner.bed.gz	Rpt_RNA_rRNA.bed.gz	Rpt_RNA_scRNA.bed.gz	Rpt_RNA_snRNA.bed.gz	Rpt_RNA_srpRNA.bed.gz	Rpt_RNA_tRNA.bed.gz	Rpt_SINE_Alu.bed.gz	Rpt_SINE_Deu.bed.gz	Rpt_SINE_MIR.bed.gz	Rpt_SINE_SINE.bed.gz	Rpt_SINE_tRNA.bed.gz	Rpt_Satellite_Satellite.bed.gz	Rpt_Satellite_acro.bed.gz	Rpt_Satellite_centr.bed.gz	Rpt_Satellite_telo.bed.gz
1_TssA	0.63856	0.38701	0.19643	0.17927	3.67890	0.06907	0.38179	1.47031	0.58226	0.10793	1.30598	0.28644	0.78809	1.02501	0.00000	0.47349	0.18897	0.21710	0.25579	0.42241	0.25899	0.51957	0.22988	0.74609	0.38772	0.20283	0.13194	0.48429	0.00000	1.00581	0.37285	0.73199	0.38863	0.23521	0.07133	0.08421	0.12089	0.17410	0.10176	0.56065	0.78457	1.55017	1.29891	0.98233	4.45941	0.50886	0.50157	0.84902	0.25922	0.51162	0.22814	0.00000	0.04368	0.70413
2_TssFlnk	0.40511	0.87867	0.46180	0.30996	3.89730	0.32631	0.85782	2.14428	1.25850	0.18804	1.66470	0.62866	0.78860	0.00000	0.29649	1.82899	0.37204	0.86210	0.86545	0.88270	0.45866	1.03281	0.44407	0.53231	0.82529	0.27257	0.34682	0.98270	0.00000	1.00830	0.51821	1.32721	0.55336	0.37377	0.18557	0.20314	0.16970	0.04034	1.28111	0.80683	0.86914	2.16566	2.03414	0.82876	6.63118	1.32095	1.53980	1.03112	1.52865	1.30701	0.16551	0.00000	0.12276	2.57850
3_TssFlnkU	0.81345	0.89343	0.48217	0.59534	0.53091	0.00055	0.79108	1.50307	0.77267	0.05210	0.59027	1.02529	1.16711	0.08046	0.03759	0.55263	0.50538	0.60803	0.64305	1.56890	0.94109	1.12135	0.76968	1.12315	1.31971	0.64096	0.28914	1.31969	0.00000	1.88636	0.93058	1.06872	0.67041	0.26633	0.56098	0.57133	1.04138	0.68085	1.09551	1.48822	0.57928	2.08537	1.44190	1.56990	1.94558	0.50200	1.99751	1.74383	1.57106	2.13757	0.16848	0.00000	0.00309	0.20041
4_TssFlnkD	0.54604	1.11015	0.55033	0.55307	0.55566	0.01852	0.73813	1.83334	0.80663	0.05935	0.70111	1.06736	1.65242	4.34792	0.29036	0.58261	0.70201	0.89424	1.04814	1.55294	0.84506	1.23650	0.90159	1.22686	1.23475	0.53672	0.35056	1.44530	0.00000	1.27465	0.77190	2.34169	0.64039	0.39350	0.48224	0.56206	0.79183	1.21379	1.08645	1.71249	2.08201	2.17236	1.37184	1.42723	2.84667	0.56206	3.45170	1.68249	1.12876	1.82269	0.11239	0.00000	0.03336	0.24843
5_Tx	3.41619	1.14186	0.51926	0.34802	0.70924	0.04108	0.87825	1.59547	1.44143	0.04949	0.56940	0.70577	1.01398	2.26780	0.33305	1.46684	0.76359	1.00291	1.34523	1.24288	0.48259	1.23826	0.28650	0.37149	0.96866	0.24133	0.39761	1.05030	0.00000	0.82715	0.97239	0.50648	0.20768	0.29070	0.40554	0.45878	0.13540	0.44549	1.16546	1.40968	1.37662	2.44984	1.84250	2.30314	1.07411	1.55393	0.49920	1.03863	0.89198	1.08761	0.17297	0.00000	0.00301	0.02922
6_TxWk	8.94276	1.13431	0.75538	0.53170	1.04305	2.63422	0.80999	1.39602	1.88938	0.10365	0.91960	0.75634	0.82440	0.29476	0.64575	1.47022	0.80893	1.32269	1.21783	1.14175	0.71157	1.22380	0.58060	0.77057	1.02011	0.78578	0.69042	1.03509	0.50303	0.84320	1.02487	0.39659	0.54387	0.80033	0.50526	0.53517	0.40456	0.56266	0.96554	1.40236	1.12893	2.12882	1.69762	1.56701	0.96947	2.13187	0.88036	1.01922	0.69401	1.04495	0.23426	0.00000	0.05268	0.14683
7_EnhG1	0.44006	1.14887	0.50050	0.39775	0.60065	0.03652	1.71878	1.74751	1.31608	0.04149	0.57691	1.01886	1.00189	0.93298	0.97366	1.09704	0.93978	1.14838	1.13089	1.27152	0.73148	1.33569	0.44301	0.69987	1.20567	0.00000	0.33180	1.24129	0.00000	1.51751	0.75042	0.09001	0.25473	0.27553	0.46181	0.51269	0.16785	0.43281	1.34044	1.55169	2.22916	2.92329	1.46739	2.29142	1.41713	1.31312	0.64525	1.32728	1.29550	1.67484	0.08151	0.00000	0.01714	0.33570
8_EnhG2	0.22175	1.06009	0.46692	0.50968	0.39335	0.00000	0.47075	1.22362	0.89947	0.11868	0.44038	1.08173	0.93160	16.09999	0.52524	1.92931	0.78244	0.55931	0.88914	1.14788	0.94844	1.29581	0.65286	0.84553	1.47981	0.40061	0.28090	1.25674	0.00000	0.30297	0.81541	0.00000	0.34251	0.15239	0.64005	0.55887	0.42840	0.10463	0.18647	1.03125	1.07961	0.76313	1.27822	2.26506	1.30256	0.70108	1.14941	1.61172	2.20866	1.61007	0.14341	0.00000	0.11338	0.00000
9_EnhA1	0.58258	1.03799	0.54295	0.87487	0.77413	0.00915	0.95334	1.26236	1.40963	0.04184	0.71153	0.92472	1.01309	1.11328	0.14719	0.43934	0.60121	0.96368	0.74422	1.24475	1.03553	1.30643	0.94860	1.33511	1.34790	0.24511	0.37696	1.25319	0.00000	0.83260	0.98936	0.96007	0.93949	0.39445	0.88546	0.79513	1.42634	0.90321	1.21097	1.42212	0.87399	2.21237	1.18583	1.30762	0.88955	1.38441	2.25276	1.50034	1.20504	1.13793	0.10033	0.00000	0.00401	0.54101
10_EnhA2	0.15936	0.84250	0.58350	0.82646	7.22018	1.10985	1.12250	1.82386	1.86087	0.35142	2.67872	1.41960	0.68469	12.80676	0.12150	0.88981	0.87179	0.85668	0.60722	0.62729	0.68700	1.06016	0.60584	1.18840	0.74236	0.00000	0.55610	0.68886	0.00000	2.50411	0.89698	0.93459	1.24239	1.48686	0.61583	0.52796	1.04856	1.14449	1.12790	1.58288	0.61555	4.20621	3.70525	0.64565	1.28870	2.16037	1.80630	0.78341	0.00000	1.23165	0.19955	0.00000	0.31032	3.57410
11_EnhWk	2.04900	1.10880	0.57595	0.76480	0.80933	0.04877	0.80218	1.32920	1.36540	0.03520	0.87012	1.13131	1.20880	0.03485	0.40884	0.60773	0.63273	0.96991	0.86514	1.52826	1.09270	1.31994	1.11916	1.42045	1.30747	1.27593	0.41065	1.29049	0.73337	1.68924	0.97293	1.76129	0.75425	0.43186	0.73073	0.85466	1.30207	0.94352	1.14412	1.16487	1.34336	1.80892	0.95565	1.88908	1.43986	1.31756	1.77423	1.53734	1.25739	1.57562	0.09436	0.00000	0.00510	0.27778
12_ZNF/Rpts	1.37355	1.02965	1.34024	2.47730	0.52431	0.17859	0.69681	1.61089	0.75154	7.01104	1.26639	0.62068	0.57030	4.48364	0.75754	0.87861	1.15745	0.80798	1.46114	0.90546	0.66520	0.83257	0.60775	0.50715	0.56122	0.23452	1.47767	0.77930	1.72812	0.23673	0.58760	1.07473	2.72874	2.77491	2.90610	1.36214	0.85350	0.45874	2.10916	0.57265	7.03638	1.09744	1.20184	1.86389	0.89449	0.79540	0.27183	0.59563	0.23606	0.56529	15.72859	23.28047	3.74748	2.55724
13_Het	3.90223	0.89597	1.36903	1.86341	0.88837	1.90908	0.76691	0.91687	0.97203	10.39256	1.33426	0.76738	0.71466	1.07501	1.24363	1.27643	1.19606	0.85686	0.98880	0.77489	0.89771	0.81892	0.81647	0.81467	0.61437	0.65742	1.52648	0.70265	0.84620	0.47449	0.75450	1.07087	2.03249	4.27978	1.94641	1.18171	0.83636	0.78078	0.91433	0.66378	2.38188	1.05488	0.86467	0.73596	0.76028	1.06502	0.36798	0.63954	0.27672	0.59438	4.68694	12.53743	12.77125	3.93504
14_TssBiv	0.06055	0.17960	0.11051	0.11974	2.95549	0.29063	0.00000	3.32436	0.21074	1.18058	1.80545	0.39682	0.00000	0.00000	0.00000	0.00000	0.13055	0.14887	0.07921	0.12633	0.02390	0.24552	0.23582	0.71949	0.23468	0.00000	0.05633	0.36271	0.00000	0.00000	0.09091	0.00000	0.21973	0.22158	0.06693	0.06301	0.09110	0.54650	1.26832	0.31706	29.56810	0.00000	1.52922	0.00000	1.56208	0.05038	1.00625	0.79043	0.00000	0.00000	2.46736	0.00000	0.69490	1.09696
15_EnhBiv	0.05910	0.38306	0.24263	0.42524	2.06627	0.00000	0.00000	0.62061	0.39332	0.24791	1.41591	0.42486	0.33314	0.00000	0.00000	0.00000	0.13193	0.38024	0.14254	0.23546	0.53903	0.51665	0.59586	1.10792	0.78632	1.54514	0.10840	0.84373	0.00000	0.00000	0.11594	4.44118	0.32944	0.04151	0.46028	0.48054	1.21052	0.79196	3.58373	0.00000	1.97585	0.00000	0.43964	0.00000	0.87376	0.13593	0.00000	1.32486	0.00000	0.99701	0.22544	0.00000	0.26522	0.00000
16_ReprPC	0.40070	0.57384	0.38170	0.43328	1.94123	0.00000	0.80437	0.93000	0.48456	0.08712	1.16224	0.74642	0.82268	0.00000	0.29031	0.35297	0.43976	0.58546	0.32205	1.47995	1.02050	0.64082	0.78955	1.60900	1.26494	1.42551	0.20343	1.15105	0.00000	1.44862	0.55634	0.05272	0.28117	0.21886	0.48030	0.57545	0.71542	0.20997	0.48860	0.64425	1.17890	1.35307	0.62911	0.04375	2.31467	0.19124	0.98204	1.53963	0.64152	2.29353	0.29412	0.00000	0.01089	0.00000
17_ReprPCWk	10.39409	1.15194	0.79391	0.92193	0.99708	0.63820	1.29458	1.21635	1.14897	0.07492	1.10209	1.32105	1.19134	1.23595	1.26799	0.83736	1.07490	1.11247	0.84231	1.38272	1.36643	1.29951	1.47024	1.69219	1.49953	1.73376	0.65635	1.37681	1.21550	0.96190	1.17733	0.85757	0.75498	0.56411	0.98212	1.05320	1.56073	1.00192	1.23902	1.53910	0.83293	0.96917	0.96160	1.08844	1.27720	1.01972	1.15871	1.61635	0.95893	1.44485	0.23361	0.00000	0.00749	0.29692
18_Quies	65.59493	0.96227	1.11203	1.06823	0.98095	0.93713	1.02373	0.82628	0.83142	0.72267	0.99739	1.02558	1.01168	0.86258	1.09919	0.95196	1.05339	0.97076	0.99312	0.89591	1.03460	0.91211	1.05852	0.96003	0.93719	1.01650	1.15189	0.93941	1.15389	1.04455	1.01286	1.10315	1.08101	0.96243	1.04856	1.10373	1.06163	1.14326	0.93951	0.85040	0.73426	0.67814	0.84442	0.79412	0.85158	0.81610	1.00444	0.88562	1.09918	0.90062	0.82246	0.29117	0.67386	1.11551
Base	100	3.22366	20.55565	8.54278	0.54844	0.13157	0.01477	0.06375	12.81177	0.37155	0.83944	0.04249	0.02007	0.00055	0.02262	0.01774	0.09250	0.05481	1.11254	0.03100	0.11154	1.47242	0.21705	0.07137	0.35603	0.00397	16.65855	3.41537	0.00034	0.00245	0.11967	0.00624	2.65458	0.27250	3.62404	1.84919	0.12360	0.01632	0.00390	0.01956	0.00564	0.00401	0.01103	0.00864	0.01097	10.02203	0.00589	2.76948	0.00676	0.00760	0.10035	0.00102	0.26199	0.00818