state (Emission order)	Genome %	Rpt_All_DNA.bed.gz	Rpt_All_LINE.bed.gz	Rpt_All_LTR.bed.gz	Rpt_All_LowCmplx.bed.gz	Rpt_All_Other.bed.gz	Rpt_All_RC.bed.gz	Rpt_All_RNA.bed.gz	Rpt_All_SINE.bed.gz	Rpt_All_Satellite.bed.gz	Rpt_All_Simple.bed.gz	Rpt_All_Unknown.bed.gz	Rpt_DNA_DNA.bed.gz	Rpt_DNA_Merlin.bed.gz	Rpt_DNA_MuDR.bed.gz	Rpt_DNA_PiggyBac.bed.gz	Rpt_DNA_TcMar-Mariner.bed.gz	Rpt_DNA_TcMar-Tc2.bed.gz	Rpt_DNA_TcMar-Tigger.bed.gz	Rpt_DNA_TcMar.bed.gz	Rpt_DNA_hAT-Blackjack.bed.gz	Rpt_DNA_hAT-Charlie.bed.gz	Rpt_DNA_hAT-Tip100.bed.gz	Rpt_DNA_hAT.bed.gz	Rpt_LINE_CR1.bed.gz	Rpt_LINE_Dong-R4.bed.gz	Rpt_LINE_L1.bed.gz	Rpt_LINE_L2.bed.gz	Rpt_LINE_Penelope.bed.gz	Rpt_LINE_RTE-BovB.bed.gz	Rpt_LINE_RTE.bed.gz	Rpt_LTR_ERV.bed.gz	Rpt_LTR_ERV1.bed.gz	Rpt_LTR_ERVK.bed.gz	Rpt_LTR_ERVL-MaLR.bed.gz	Rpt_LTR_ERVL.bed.gz	Rpt_LTR_Gypsy.bed.gz	Rpt_LTR_LTR.bed.gz	Rpt_RNA_RNA.bed.gz	Rpt_RNA_TcMar-Mariner.bed.gz	Rpt_RNA_rRNA.bed.gz	Rpt_RNA_scRNA.bed.gz	Rpt_RNA_snRNA.bed.gz	Rpt_RNA_srpRNA.bed.gz	Rpt_RNA_tRNA.bed.gz	Rpt_SINE_Alu.bed.gz	Rpt_SINE_Deu.bed.gz	Rpt_SINE_MIR.bed.gz	Rpt_SINE_SINE.bed.gz	Rpt_SINE_tRNA.bed.gz	Rpt_Satellite_Satellite.bed.gz	Rpt_Satellite_acro.bed.gz	Rpt_Satellite_centr.bed.gz	Rpt_Satellite_telo.bed.gz
1	2.17896	0.93761	0.40146	0.34786	0.61090	0.86082	0.48728	1.28749	1.45228	0.18580	0.66191	0.45723	0.68623	2.18355	0.25257	0.88830	0.62099	0.77801	1.08632	0.92574	0.37544	1.04440	0.22490	0.28598	0.72212	0.00000	0.28993	0.90830	0.00000	0.93504	0.66756	0.03785	0.22199	0.48449	0.41699	0.39738	0.07260	0.20220	0.65278	0.93156	1.17414	2.41121	1.49665	2.19978	0.86585	1.58584	0.26255	0.97173	0.74659	0.93334	0.57372	0.00000	0.00265	0.02998
2	4.30530	1.12829	0.65964	0.40223	0.95528	2.02249	0.92581	1.52590	1.86750	0.08015	0.75689	0.74697	0.74206	0.74330	0.24327	1.72001	0.92246	1.26199	1.34742	1.17445	0.55303	1.18625	0.26257	0.43628	0.96553	0.56849	0.59704	0.92675	0.00000	0.76940	0.92740	0.49192	0.33118	0.68546	0.43164	0.41984	0.17592	0.40527	1.27692	1.45537	0.89634	2.54802	1.94267	2.00766	0.89672	2.12033	0.43597	0.95582	0.64433	0.88931	0.23626	0.00000	0.00594	0.03427
3	0.12800	0.71922	0.30145	0.61492	0.49755	0.05648	0.66172	0.71714	0.83464	0.10364	0.68627	0.80165	0.47564	0.00000	0.00000	0.70127	0.28887	0.69823	0.58837	0.91616	0.50143	0.92690	0.43564	0.46795	0.59277	0.27241	0.17768	0.87657	0.00000	0.00000	0.42561	0.00000	0.93598	0.50977	0.39526	0.61458	0.28771	0.20765	0.00000	0.54790	0.83298	0.38408	1.01139	1.11341	0.72468	0.74694	1.35604	1.15003	1.71977	1.04703	0.32413	0.00000	0.00000	0.00000
4	25.73017	1.16480	0.89606	0.91066	0.99884	0.86607	1.19040	1.24833	1.42823	0.05683	1.05414	1.06846	1.15361	0.85920	0.94671	1.15103	0.99960	1.23276	1.07835	1.24986	1.07399	1.24872	1.12794	1.24072	1.23517	1.29773	0.82876	1.18104	0.66846	1.08302	1.19952	0.85985	0.98703	0.70326	0.89526	0.85235	1.02539	1.01748	1.06297	1.38751	1.00937	1.36267	1.25463	1.38523	1.03606	1.46714	1.24599	1.28862	1.07529	1.14589	0.14868	0.08790	0.00674	0.22894
5	2.27019	0.90532	0.42667	0.98219	0.71508	0.02125	1.06107	1.09570	0.71670	0.04240	0.75525	1.31603	1.55082	0.00000	0.10439	0.44015	0.45600	0.59735	0.44715	1.17196	0.96911	1.24260	1.08316	1.35354	1.08635	1.01630	0.24952	1.21921	1.09617	1.95575	0.69810	1.70967	1.32488	0.72958	0.66522	1.10559	1.42209	0.87571	1.44637	1.04074	0.98958	0.57930	0.59519	1.00112	1.89317	0.50542	2.56300	1.47383	2.09423	2.45040	0.11906	0.00000	0.00049	0.19794
6	0.92297	0.82508	0.44322	1.62007	0.82212	0.02450	0.97115	1.11753	0.74060	0.03686	0.69051	1.00521	1.57022	0.00000	0.21518	0.59991	0.47131	0.60075	0.50627	1.55285	0.89874	1.06220	0.84219	1.09963	1.05197	0.97417	0.32026	0.96640	2.85174	2.12311	0.93249	2.08364	3.19805	1.93991	0.72600	1.00862	1.47264	1.41088	0.93068	1.00514	0.83213	1.47814	0.83614	1.13731	1.67061	0.60184	2.84576	1.23469	2.23431	1.80387	0.09701	0.00000	0.00184	0.22851
7	0.09736	0.46502	0.23271	0.54562	0.74169	0.00000	0.30665	1.39368	0.57862	0.14724	0.83799	0.89749	0.89599	0.00000	0.00000	0.70426	0.24046	0.03694	0.22407	0.55651	0.50443	0.64044	0.46113	1.10023	0.35840	0.00000	0.10677	0.84187	0.00000	0.00000	0.19056	0.00000	1.18239	0.52038	0.16853	0.35946	0.45937	0.15305	3.14850	0.83436	0.71448	1.68320	1.65225	0.00000	2.85212	0.30481	1.81722	1.56319	1.24507	3.46806	0.46048	0.00000	0.00000	0.00000
8	0.43995	0.17010	0.09072	0.35057	5.91462	0.05604	0.06987	1.45261	0.26547	0.14406	1.77059	0.11618	0.04985	0.00000	0.00000	0.08002	0.02946	0.03447	0.05660	0.08893	0.13857	0.25471	0.17794	0.65192	0.15471	0.00000	0.05481	0.26275	0.00000	0.11898	0.04192	0.30138	0.98056	0.35827	0.02656	0.07501	0.08878	0.08650	0.00000	0.00000	0.24365	1.03180	2.53793	0.52177	4.97795	0.20415	0.20171	0.48983	0.08046	0.07272	0.32471	0.00000	0.00000	1.98460
9	0.48407	0.43088	0.30018	0.45376	3.80747	0.09965	0.19554	2.51663	0.81196	0.38842	1.48377	0.20208	0.49431	0.00000	0.10833	0.51557	0.16514	0.16606	0.20774	0.24423	0.24681	0.61602	0.36748	1.26434	0.48812	0.24011	0.19352	0.80536	0.00000	0.70426	0.31342	1.11615	1.15139	0.53641	0.08691	0.14572	0.22428	0.15017	0.73590	0.29220	0.99414	2.16666	1.15484	1.16512	10.47333	0.71870	0.49924	1.15259	0.69616	0.74843	0.48952	0.00000	0.03008	10.46221
10	0.60152	0.26013	0.12962	0.21275	3.44284	0.00613	0.21508	1.11175	0.33117	0.64273	1.62743	0.29079	0.35208	0.00000	0.00000	0.06833	0.07472	0.16293	0.06135	0.23004	0.16198	0.35885	0.57098	0.96670	0.40410	0.39474	0.04355	0.52411	0.00000	0.00000	0.15144	0.24907	0.33523	0.38749	0.12144	0.17051	0.41504	0.16905	0.25901	0.14120	5.49785	0.34872	0.81904	0.28369	2.06594	0.13925	1.01972	1.02654	0.41595	0.93436	0.65060	0.00000	0.52982	4.25846
11	2.80051	1.01587	0.77958	0.99490	1.09828	0.85920	0.97307	1.23143	1.49090	0.39797	1.60453	1.05674	0.79241	1.38454	0.68208	0.66436	0.79706	1.07999	0.71525	1.07168	1.10515	1.15530	1.50099	1.68948	1.27282	1.14965	0.65096	1.35673	0.82024	0.68726	0.91102	0.57226	0.86115	1.00791	1.06228	1.04934	1.17214	0.76216	1.38989	1.00773	1.32910	1.32073	1.02315	1.71183	1.32139	1.47135	1.03355	1.56686	0.40983	1.05671	0.75257	0.00000	0.20011	1.27113
12	0.85133	0.82894	0.49930	0.81438	1.29524	0.07054	0.48760	1.14100	1.11261	0.65305	1.71954	0.73701	1.39515	0.00000	0.39937	0.19356	0.57629	0.70404	0.46856	0.67070	0.93982	1.01675	1.27124	1.69191	1.07894	0.90402	0.31463	1.34308	0.00000	0.34842	0.64886	0.93389	0.89649	0.92376	0.74425	0.80624	0.98761	0.30843	0.59847	0.81887	2.11777	1.45335	0.94443	1.43525	1.24707	0.94984	0.88571	1.70627	1.03033	0.95270	0.49591	0.00000	0.71022	1.35654
13	52.84870	0.97007	1.11723	0.95805	0.95984	0.40159	1.02146	0.81423	0.74637	0.33462	0.93057	1.08601	1.01879	1.02363	1.21474	0.98525	1.10133	0.96433	1.02576	0.94268	1.07608	0.89641	1.05458	0.94809	0.96907	1.03585	1.15348	0.95724	1.42639	1.06089	1.03071	1.03839	0.82127	0.60823	0.99267	1.13370	1.12037	1.17254	0.98195	0.88711	0.68865	0.64863	0.81411	0.70068	0.84089	0.71348	0.95580	0.86427	1.08195	0.95094	0.57090	0.22240	0.21210	0.59554
14	4.53506	0.80970	1.81614	2.23295	0.84046	6.54235	0.61396	0.55885	0.71354	4.16214	1.18293	0.50499	0.49948	1.75478	1.31436	0.79951	1.13324	0.80826	0.99331	0.49134	0.86180	0.67247	0.72724	0.58499	0.48810	0.35058	2.10975	0.55466	0.00000	0.26518	0.57677	1.90483	2.68192	5.72662	2.14981	1.30102	0.73259	0.70842	0.74910	0.30314	0.89393	0.73825	0.78043	0.45824	0.56025	0.78165	0.30029	0.46897	0.14819	0.30497	4.84716	6.98356	3.80931	4.45654
15	1.80589	0.68955	0.90747	3.03577	0.61213	7.54121	0.41025	1.24444	0.58741	32.53884	1.48211	0.32993	0.28947	2.21585	0.63500	0.71182	0.67628	0.38899	0.67959	0.32475	0.59429	0.74971	0.61122	0.50366	0.26717	0.13516	1.00567	0.50976	0.00000	0.27722	0.39768	1.73586	3.63722	6.62360	3.32502	1.21566	0.54188	0.28444	0.59504	0.30939	8.05789	0.85619	0.70786	0.75721	0.63048	0.62897	0.12671	0.43886	0.15224	0.32583	21.04597	30.07606	38.65661	15.69197
Base	100	3.17622	20.37019	8.52483	0.54494	0.12958	0.01461	0.06285	12.65009	0.40493	0.83937	0.04177	0.01974	0.00057	0.02230	0.01753	0.09120	0.05389	1.09647	0.03047	0.11037	1.45051	0.21341	0.07032	0.35076	0.00389	16.53850	3.35731	0.00034	0.00241	0.11770	0.00619	2.69365	0.28544	3.57966	1.82598	0.12148	0.01604	0.00384	0.01921	0.00567	0.00394	0.01090	0.00850	0.01080	9.90843	0.00579	2.72173	0.00666	0.00747	0.12948	0.00100	0.26624	0.00821