state (Emission order)	Genome %	Rpt_All_DNA.bed.gz	Rpt_All_LINE.bed.gz	Rpt_All_LTR.bed.gz	Rpt_All_LowCmplx.bed.gz	Rpt_All_Other.bed.gz	Rpt_All_RC.bed.gz	Rpt_All_RNA.bed.gz	Rpt_All_SINE.bed.gz	Rpt_All_Satellite.bed.gz	Rpt_All_Simple.bed.gz	Rpt_All_Unknown.bed.gz	Rpt_DNA_DNA.bed.gz	Rpt_DNA_Merlin.bed.gz	Rpt_DNA_MuDR.bed.gz	Rpt_DNA_PiggyBac.bed.gz	Rpt_DNA_TcMar-Mariner.bed.gz	Rpt_DNA_TcMar-Tc2.bed.gz	Rpt_DNA_TcMar-Tigger.bed.gz	Rpt_DNA_TcMar.bed.gz	Rpt_DNA_hAT-Blackjack.bed.gz	Rpt_DNA_hAT-Charlie.bed.gz	Rpt_DNA_hAT-Tip100.bed.gz	Rpt_DNA_hAT.bed.gz	Rpt_LINE_CR1.bed.gz	Rpt_LINE_Dong-R4.bed.gz	Rpt_LINE_L1.bed.gz	Rpt_LINE_L2.bed.gz	Rpt_LINE_Penelope.bed.gz	Rpt_LINE_RTE-BovB.bed.gz	Rpt_LINE_RTE.bed.gz	Rpt_LTR_ERV.bed.gz	Rpt_LTR_ERV1.bed.gz	Rpt_LTR_ERVK.bed.gz	Rpt_LTR_ERVL-MaLR.bed.gz	Rpt_LTR_ERVL.bed.gz	Rpt_LTR_Gypsy.bed.gz	Rpt_LTR_LTR.bed.gz	Rpt_RNA_RNA.bed.gz	Rpt_RNA_TcMar-Mariner.bed.gz	Rpt_RNA_rRNA.bed.gz	Rpt_RNA_scRNA.bed.gz	Rpt_RNA_snRNA.bed.gz	Rpt_RNA_srpRNA.bed.gz	Rpt_RNA_tRNA.bed.gz	Rpt_SINE_Alu.bed.gz	Rpt_SINE_Deu.bed.gz	Rpt_SINE_MIR.bed.gz	Rpt_SINE_SINE.bed.gz	Rpt_SINE_tRNA.bed.gz	Rpt_Satellite_Satellite.bed.gz	Rpt_Satellite_acro.bed.gz	Rpt_Satellite_centr.bed.gz	Rpt_Satellite_telo.bed.gz
1	2.19793	0.93976	0.40241	0.34833	0.61200	0.86926	0.49123	1.28550	1.45484	0.18492	0.66218	0.45673	0.68031	2.16470	0.25039	0.88265	0.63848	0.77629	1.09025	0.92668	0.37424	1.04546	0.22435	0.28552	0.72048	0.00000	0.29088	0.90955	0.00000	0.92697	0.66764	0.03753	0.22276	0.48190	0.41732	0.39833	0.07197	0.20045	0.67052	0.93883	1.16401	2.45415	1.50179	2.12771	0.87621	1.58934	0.26028	0.97087	0.74014	0.95085	0.57104	0.00000	0.00263	0.02972
2	4.34554	1.12810	0.66215	0.40350	0.95670	2.01877	0.91963	1.52385	1.86752	0.07914	0.75576	0.73831	0.75560	0.73642	0.24219	1.73305	0.92134	1.25620	1.34547	1.17051	0.55155	1.18726	0.26460	0.43460	0.96910	0.56322	0.59978	0.92799	0.00000	0.76227	0.93107	0.49613	0.33457	0.68341	0.43196	0.42046	0.17508	0.40865	1.25502	1.46499	0.94734	2.49256	1.91350	2.01513	0.89248	2.11990	0.44773	0.95746	0.63959	0.87959	0.23325	0.00000	0.00589	0.03396
3	0.12419	0.71305	0.30515	0.61677	0.49590	0.05821	0.24042	0.78678	0.82753	0.03642	0.71382	0.81758	0.49027	0.00000	0.00000	0.72283	0.25212	0.67577	0.57178	0.94433	0.51684	0.93042	0.40272	0.49454	0.60736	0.28079	0.18173	0.87703	0.00000	0.00000	0.44068	0.00000	0.90852	0.51551	0.41027	0.63280	0.29655	0.21403	0.00000	0.34806	0.85859	0.39589	1.07827	2.08718	0.63371	0.73384	1.24043	1.16519	1.77265	0.91560	0.11391	0.00000	0.00000	0.00000
4	26.25000	1.16658	0.90047	0.91387	0.99837	0.85802	1.19155	1.24155	1.42076	0.05951	1.05595	1.07707	1.15792	0.85810	0.95715	1.13788	1.00313	1.22733	1.08007	1.25690	1.08613	1.24921	1.13213	1.24826	1.23399	1.29939	0.83381	1.18269	0.65522	1.09133	1.20918	0.84085	0.98547	0.70483	0.90088	0.85776	1.03476	1.02706	1.05690	1.37236	1.00315	1.36777	1.25159	1.36866	1.04322	1.45780	1.25010	1.28783	1.07979	1.15811	0.15527	0.08616	0.00776	0.22441
5	2.28525	0.90521	0.42688	0.98565	0.70906	0.02131	1.05408	1.10893	0.71824	0.04204	0.75468	1.31839	1.53637	0.00000	0.11201	0.43725	0.45262	0.59510	0.44694	1.17681	0.96903	1.24302	1.08427	1.34629	1.08662	1.00961	0.24962	1.22025	1.08895	1.89176	0.69140	1.69840	1.32763	0.72422	0.66968	1.10955	1.42673	0.86994	1.46300	1.03205	1.02048	0.69954	0.61072	1.00400	1.90164	0.50719	2.54538	1.47446	2.12286	2.45090	0.11801	0.00000	0.00048	0.19663
6	0.11702	0.48783	0.33536	0.33274	0.54328	0.05326	0.38743	1.31458	0.81498	0.30050	0.60223	0.37732	0.76365	0.00000	0.00000	0.46309	0.31810	0.09681	0.23602	0.69588	0.21359	0.69986	0.42725	1.16818	0.76504	0.00000	0.13668	1.26887	0.00000	0.02294	0.35978	0.81190	0.63938	0.36536	0.15226	0.21697	0.51467	0.07743	2.64834	0.77467	2.53370	0.93828	1.02024	0.95809	1.87689	0.57538	0.79174	1.68595	0.38121	1.68840	0.77456	0.00000	0.00000	2.60592
7	0.08439	0.45842	0.22700	0.56130	0.71066	0.00000	0.35380	1.54885	0.58659	0.16099	0.83365	0.93466	0.72148	0.00000	0.00000	0.72953	0.27743	0.04262	0.21530	0.20481	0.51573	0.64492	0.49094	0.88126	0.37312	0.00000	0.10336	0.82147	0.00000	0.00000	0.21986	0.00000	1.21619	0.52274	0.17461	0.36931	0.47453	0.17657	3.63252	0.96262	0.82431	2.85467	1.75529	0.00000	2.76578	0.30988	1.36906	1.58291	1.43647	3.24297	0.50348	0.00000	0.00000	0.00000
8	0.92668	0.82393	0.44270	1.61510	0.82450	0.02440	1.01333	1.10275	0.74160	0.03730	0.68817	1.00119	1.55512	0.00000	0.21432	0.59752	0.47994	0.59835	0.50468	1.56953	0.89884	1.06018	0.84118	1.10520	1.04738	0.97028	0.31938	0.96782	2.84035	2.23774	0.93602	2.07532	3.19000	1.92940	0.72363	1.00369	1.47221	1.40524	0.86244	1.00112	0.82881	1.38470	0.80083	1.13277	1.69107	0.60285	2.85547	1.23556	2.22539	1.83585	0.09846	0.00000	0.00183	0.22759
9	0.42830	0.17602	0.09228	0.35008	5.73942	0.05756	0.07177	1.31067	0.26533	0.14131	1.71516	0.12205	0.05121	0.00000	0.00000	0.08220	0.03027	0.04185	0.06140	0.09135	0.14234	0.26407	0.16692	0.67030	0.15529	0.00000	0.05519	0.27103	0.00000	0.12221	0.01878	0.30958	0.97273	0.37599	0.02616	0.08129	0.09815	0.08886	0.00000	0.00000	0.25028	1.01968	2.45548	0.53596	4.22466	0.20082	0.35054	0.50095	0.08264	0.07470	0.32906	0.00000	0.00000	1.78042
10	0.39990	0.40797	0.28326	0.51400	4.96242	0.10503	0.15982	2.95120	0.78138	0.41240	1.80390	0.15914	0.44078	0.00000	0.13113	0.50609	0.14862	0.20251	0.20369	0.12435	0.24262	0.57090	0.36674	1.28797	0.39401	0.29065	0.20757	0.64368	0.00000	0.85248	0.30012	1.11349	1.36313	0.68644	0.07205	0.12551	0.15100	0.15911	0.81497	0.21112	0.46196	1.83997	1.42976	1.12998	13.26805	0.73608	0.47313	0.94733	0.73114	0.67677	0.43590	0.00000	0.03971	12.17815
11	0.59977	0.26194	0.12963	0.21180	3.40838	0.00615	0.21571	1.10017	0.33079	0.63206	1.61375	0.29164	0.35311	0.00000	0.00000	0.06853	0.07494	0.16341	0.06148	0.23531	0.16465	0.36157	0.57264	0.97748	0.40284	0.39589	0.04346	0.52468	0.00000	0.00000	0.15188	0.24980	0.33516	0.37262	0.12055	0.17114	0.40167	0.16954	0.25976	0.14161	5.51390	0.34974	0.77154	0.28452	2.03605	0.13775	1.02270	1.03022	0.41716	0.94141	0.65109	0.00000	0.51298	4.27089
12	2.78572	1.01641	0.78077	0.99431	1.09767	0.85286	0.96641	1.22653	1.48887	0.39743	1.60313	1.06988	0.78205	1.39189	0.68819	0.63130	0.79778	1.08953	0.71804	1.07166	1.09746	1.15509	1.50173	1.68552	1.27278	1.15576	0.65212	1.35791	0.82459	0.69091	0.91983	0.57530	0.85903	1.00624	1.06138	1.05064	1.17933	0.83075	1.39727	1.00252	1.33616	1.32774	1.01742	1.70591	1.30370	1.46859	0.97111	1.56766	0.40034	1.06232	0.75008	0.00000	0.20117	1.24963
13	0.85296	0.82887	0.49857	0.81391	1.29457	0.07040	0.48667	1.13882	1.11252	0.65645	1.71869	0.73560	1.39249	0.00000	0.39860	0.19319	0.57519	0.71676	0.46944	0.66942	0.93209	1.01653	1.27004	1.68868	1.07756	0.90229	0.31425	1.34072	0.00000	0.34775	0.64762	0.93210	0.89573	0.92200	0.74375	0.80633	0.98872	0.30784	0.59733	0.81731	2.11372	1.45057	0.94263	1.43251	1.24469	0.95018	0.88402	1.70465	1.02837	0.95088	0.50365	0.00000	0.70886	1.44621
14	52.27176	0.96712	1.11783	0.95743	0.95968	0.40271	1.02041	0.81216	0.74237	0.33682	0.92924	1.08201	1.01583	1.02694	1.21418	0.99121	1.10045	0.96402	1.02416	0.93733	1.07165	0.89225	1.05237	0.94252	0.96689	1.03355	1.15497	0.95400	1.44213	1.05765	1.02403	1.05011	0.82033	0.60658	0.99185	1.13430	1.11691	1.16722	0.97977	0.88882	0.68312	0.63851	0.81170	0.70118	0.83520	0.70951	0.95346	0.86021	1.07960	0.94106	0.57298	0.22485	0.21422	0.60212
15	4.52546	0.80887	1.81593	2.23324	0.84090	6.52982	0.61527	0.56195	0.71373	4.17108	1.18110	0.50746	0.50028	1.75850	1.29720	0.79575	1.13164	0.81037	0.99205	0.47955	0.86025	0.67199	0.72934	0.58401	0.48814	0.35132	2.10960	0.55415	0.00000	0.23341	0.57473	1.90887	2.68302	5.74021	2.14818	1.30174	0.73384	0.70182	0.75069	0.30415	0.89179	0.76245	0.78635	0.45921	0.56144	0.78201	0.30093	0.46850	0.14850	0.30561	4.85679	6.99838	3.81788	4.46599
16	1.80513	0.68978	0.90795	3.03578	0.61063	7.53530	0.40908	1.23970	0.58698	32.54588	1.48255	0.33007	0.28959	2.21678	0.64827	0.71212	0.67341	0.38916	0.68142	0.31637	0.59321	0.74917	0.61038	0.50387	0.26728	0.13522	1.00617	0.51012	0.00000	0.35838	0.39899	1.73659	3.63736	6.61623	3.32515	1.21614	0.54361	0.28456	0.59529	0.30393	8.06129	0.79981	0.70816	0.75753	0.63074	0.62841	0.12677	0.43891	0.15230	0.32596	21.04696	30.08876	38.66659	15.69860
Base	100	3.17622	20.37019	8.52483	0.54494	0.12958	0.01461	0.06285	12.65009	0.40493	0.83937	0.04177	0.01974	0.00057	0.02230	0.01753	0.09120	0.05389	1.09647	0.03047	0.11037	1.45051	0.21341	0.07032	0.35076	0.00389	16.53850	3.35731	0.00034	0.00241	0.11770	0.00619	2.69365	0.28544	3.57966	1.82598	0.12148	0.01604	0.00384	0.01921	0.00567	0.00394	0.01090	0.00850	0.01080	9.90843	0.00579	2.72173	0.00666	0.00747	0.12948	0.00100	0.26624	0.00821