ChromHMM Report

Input Directory: /broad/compbio/anshul/projects/roadmap/segmentations/binary/chmmDefault/core_K27ac/binaryData
Output Directory: /broad/compbio/anshul/projects/roadmap/segmentations/models/core_K27ac/parallel/set1/n16
Number of States: 16
Assembly: hg19
Full ChromHMM command: LearnModel -p 0 -b 200 -f /broad/compbio/anshul/projects/roadmap/segmentations/binary/chmmDefault/core_K27ac/sets/set1/set1.filenames -i coreK27ac -l /broad/compbio/anshul/projects/encode/rawdata/annotations/genomeSize/hg19.genome /broad/compbio/anshul/projects/roadmap/segmentations/binary/chmmDefault/core_K27ac/binaryData /broad/compbio/anshul/projects/roadmap/segmentations/models/core_K27ac/parallel/set1/n16 16 hg19

Model Parameters


  • Emission Parameter SVG File
  • Emission Parameter Tab-Delimited Text File

  • Transition Parameter SVG File
  • Transition Parameter Tab-Delimited Text File

  • All Model Parameters Tab-Delimited Text File

    Genome Segmentation Files

  • E003_16_coreK27ac Segmentation File (Four Column Bed File)
  • E005_16_coreK27ac Segmentation File (Four Column Bed File)
  • E006_16_coreK27ac Segmentation File (Four Column Bed File)
  • E011_16_coreK27ac Segmentation File (Four Column Bed File)
  • E014_16_coreK27ac Segmentation File (Four Column Bed File)
  • E016_16_coreK27ac Segmentation File (Four Column Bed File)
  • E017_16_coreK27ac Segmentation File (Four Column Bed File)
  • E029_16_coreK27ac Segmentation File (Four Column Bed File)
  • E032_16_coreK27ac Segmentation File (Four Column Bed File)
  • E039_16_coreK27ac Segmentation File (Four Column Bed File)
  • E040_16_coreK27ac Segmentation File (Four Column Bed File)
  • E041_16_coreK27ac Segmentation File (Four Column Bed File)
  • E045_16_coreK27ac Segmentation File (Four Column Bed File)
  • E046_16_coreK27ac Segmentation File (Four Column Bed File)
  • E049_16_coreK27ac Segmentation File (Four Column Bed File)
  • E055_16_coreK27ac Segmentation File (Four Column Bed File)
  • E058_16_coreK27ac Segmentation File (Four Column Bed File)
  • E061_16_coreK27ac Segmentation File (Four Column Bed File)
  • E063_16_coreK27ac Segmentation File (Four Column Bed File)
  • E066_16_coreK27ac Segmentation File (Four Column Bed File)
  • E068_16_coreK27ac Segmentation File (Four Column Bed File)
  • E071_16_coreK27ac Segmentation File (Four Column Bed File)
  • E075_16_coreK27ac Segmentation File (Four Column Bed File)
  • E080_16_coreK27ac Segmentation File (Four Column Bed File)
  • E085_16_coreK27ac Segmentation File (Four Column Bed File)
  • E090_16_coreK27ac Segmentation File (Four Column Bed File)
  • E091_16_coreK27ac Segmentation File (Four Column Bed File)
  • E103_16_coreK27ac Segmentation File (Four Column Bed File)
  • E111_16_coreK27ac Segmentation File (Four Column Bed File)
  • E115_16_coreK27ac Segmentation File (Four Column Bed File)
  • E118_16_coreK27ac Segmentation File (Four Column Bed File)
  • E119_16_coreK27ac Segmentation File (Four Column Bed File)
  • E120_16_coreK27ac Segmentation File (Four Column Bed File)
  • E121_16_coreK27ac Segmentation File (Four Column Bed File)
  • E123_16_coreK27ac Segmentation File (Four Column Bed File)
  • E124_16_coreK27ac Segmentation File (Four Column Bed File)
  • E125_16_coreK27ac Segmentation File (Four Column Bed File)
  • E126_16_coreK27ac Segmentation File (Four Column Bed File)
  • E127_16_coreK27ac Segmentation File (Four Column Bed File)
  • E128_16_coreK27ac Segmentation File (Four Column Bed File)

    Custom Tracks for loading into the UCSC Genome Browser:
  • E003_16_coreK27ac Browser Custom Track Dense File
  • E003_16_coreK27ac Browser Custom Track Expanded File
  • E005_16_coreK27ac Browser Custom Track Dense File
  • E005_16_coreK27ac Browser Custom Track Expanded File
  • E006_16_coreK27ac Browser Custom Track Dense File
  • E006_16_coreK27ac Browser Custom Track Expanded File
  • E011_16_coreK27ac Browser Custom Track Dense File
  • E011_16_coreK27ac Browser Custom Track Expanded File
  • E014_16_coreK27ac Browser Custom Track Dense File
  • E014_16_coreK27ac Browser Custom Track Expanded File
  • E016_16_coreK27ac Browser Custom Track Dense File
  • E016_16_coreK27ac Browser Custom Track Expanded File
  • E017_16_coreK27ac Browser Custom Track Dense File
  • E017_16_coreK27ac Browser Custom Track Expanded File
  • E029_16_coreK27ac Browser Custom Track Dense File
  • E029_16_coreK27ac Browser Custom Track Expanded File
  • E032_16_coreK27ac Browser Custom Track Dense File
  • E032_16_coreK27ac Browser Custom Track Expanded File
  • E039_16_coreK27ac Browser Custom Track Dense File
  • E039_16_coreK27ac Browser Custom Track Expanded File
  • E040_16_coreK27ac Browser Custom Track Dense File
  • E040_16_coreK27ac Browser Custom Track Expanded File
  • E041_16_coreK27ac Browser Custom Track Dense File
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