state (Emission order)	Genome %	Rpt_All_DNA.bed.gz	Rpt_All_LINE.bed.gz	Rpt_All_LTR.bed.gz	Rpt_All_LowCmplx.bed.gz	Rpt_All_Other.bed.gz	Rpt_All_RC.bed.gz	Rpt_All_RNA.bed.gz	Rpt_All_SINE.bed.gz	Rpt_All_Satellite.bed.gz	Rpt_All_Simple.bed.gz	Rpt_All_Unknown.bed.gz	Rpt_DNA_DNA.bed.gz	Rpt_DNA_Merlin.bed.gz	Rpt_DNA_MuDR.bed.gz	Rpt_DNA_PiggyBac.bed.gz	Rpt_DNA_TcMar-Mariner.bed.gz	Rpt_DNA_TcMar-Tc2.bed.gz	Rpt_DNA_TcMar-Tigger.bed.gz	Rpt_DNA_TcMar.bed.gz	Rpt_DNA_hAT-Blackjack.bed.gz	Rpt_DNA_hAT-Charlie.bed.gz	Rpt_DNA_hAT-Tip100.bed.gz	Rpt_DNA_hAT.bed.gz	Rpt_LINE_CR1.bed.gz	Rpt_LINE_Dong-R4.bed.gz	Rpt_LINE_L1.bed.gz	Rpt_LINE_L2.bed.gz	Rpt_LINE_Penelope.bed.gz	Rpt_LINE_RTE-BovB.bed.gz	Rpt_LINE_RTE.bed.gz	Rpt_LTR_ERV.bed.gz	Rpt_LTR_ERV1.bed.gz	Rpt_LTR_ERVK.bed.gz	Rpt_LTR_ERVL-MaLR.bed.gz	Rpt_LTR_ERVL.bed.gz	Rpt_LTR_Gypsy.bed.gz	Rpt_LTR_LTR.bed.gz	Rpt_RNA_RNA.bed.gz	Rpt_RNA_TcMar-Mariner.bed.gz	Rpt_RNA_rRNA.bed.gz	Rpt_RNA_scRNA.bed.gz	Rpt_RNA_snRNA.bed.gz	Rpt_RNA_srpRNA.bed.gz	Rpt_RNA_tRNA.bed.gz	Rpt_SINE_Alu.bed.gz	Rpt_SINE_Deu.bed.gz	Rpt_SINE_MIR.bed.gz	Rpt_SINE_SINE.bed.gz	Rpt_SINE_tRNA.bed.gz	Rpt_Satellite_Satellite.bed.gz	Rpt_Satellite_acro.bed.gz	Rpt_Satellite_centr.bed.gz	Rpt_Satellite_telo.bed.gz
1	0.09157	0.43258	0.23048	0.51270	0.74799	0.00000	0.32604	1.16073	0.57805	0.16491	0.76379	0.95422	0.66488	0.00000	0.00000	0.49114	0.21157	0.08248	0.19541	0.18874	0.45929	0.61762	0.39440	1.10557	0.39001	0.00000	0.10317	0.84201	0.00000	0.00000	0.21190	0.00000	1.14909	0.59666	0.13607	0.30798	0.43730	0.16272	2.17958	0.67772	0.56039	2.63071	1.22613	0.00000	2.28411	0.30179	1.26165	1.57645	1.16492	2.20010	0.51575	0.00000	0.00000	0.00000
2	0.11657	0.49396	0.33874	0.33530	0.56817	0.05346	0.38893	1.34217	0.81549	0.30960	0.61886	0.37878	0.76661	0.00000	0.00000	0.40480	0.31934	0.09719	0.22693	0.69858	0.21442	0.71394	0.47098	1.17271	0.78033	0.00000	0.14163	1.26317	0.00000	0.02303	0.36706	0.81505	0.63247	0.37221	0.15148	0.23591	0.56936	0.07773	2.65861	0.77768	2.54353	1.29338	1.02420	0.42059	2.31286	0.57359	0.79481	1.69315	0.38269	2.31432	0.80239	0.00000	0.00000	2.61603
3	0.38779	0.40716	0.28354	0.49756	4.97827	0.12117	0.15854	3.01940	0.78754	0.42279	1.82822	0.16012	0.45455	0.00000	0.13523	0.33177	0.16467	0.18735	0.20299	0.12824	0.26220	0.57008	0.36079	1.29421	0.40240	0.29973	0.20629	0.65091	0.00000	0.87911	0.29506	1.14827	1.32287	0.59203	0.07119	0.12416	0.14934	0.16408	0.84043	0.21772	0.47639	1.92280	1.44844	1.16528	13.55982	0.74327	0.48791	0.94966	0.75398	0.69791	0.44990	0.00000	0.04096	12.42970
4	0.42523	0.16967	0.09031	0.35140	5.88101	0.05798	0.07229	1.33320	0.25931	0.14254	1.73891	0.10293	0.05158	0.00000	0.00000	0.05765	0.03998	0.03285	0.05271	0.10573	0.13903	0.25720	0.17756	0.62751	0.14699	0.00000	0.05548	0.25816	0.00000	0.12310	0.02846	0.31182	0.98150	0.37474	0.02701	0.07384	0.09192	0.08950	0.00000	0.04509	0.25209	1.02706	2.36804	0.53983	4.35725	0.19687	0.38982	0.48728	0.08324	0.07524	0.32463	0.00000	0.00000	1.91081
5	0.65979	0.93827	0.53365	1.87817	1.32024	0.06612	0.80513	1.51710	0.98539	0.03680	0.82861	0.99690	1.72574	0.00000	0.03535	0.60203	0.74225	1.12983	0.68989	1.46820	0.85187	1.12999	0.88383	1.18576	0.99806	0.81664	0.45830	0.83099	0.00000	1.34056	1.23893	2.55082	3.86227	3.59102	0.77663	0.88626	1.33641	1.66663	1.12449	1.95692	1.50454	2.28135	1.31469	0.47637	1.62542	0.97625	1.78995	1.01265	2.03421	1.61324	0.11510	0.00000	0.00000	0.00000
6	0.50603	0.75997	0.38301	1.31885	0.55459	0.00734	0.87801	1.01641	0.64437	0.04934	0.67300	0.97724	1.48553	0.00000	0.33322	0.43965	0.36291	0.34767	0.35810	1.29494	0.93646	1.04262	0.88634	1.15692	1.03110	1.05330	0.22234	1.09259	5.20141	1.73994	0.72390	1.40608	2.40179	0.96614	0.65106	1.07018	1.56231	1.04892	1.31640	0.87844	1.08621	0.71247	0.41566	1.61175	1.36774	0.43050	3.61878	1.40926	2.57949	1.60364	0.11803	0.00000	0.00336	0.46344
7	0.02448	0.57002	0.22583	0.82564	0.43249	0.00000	0.00000	0.83776	0.75382	0.03617	0.42432	1.62053	1.23022	0.00000	0.00000	5.35367	0.00000	0.31589	0.45035	0.00000	0.68629	0.66685	0.58249	0.20266	0.24492	0.00000	0.13133	0.69193	0.00000	0.00000	0.16369	0.00000	1.50310	0.35921	0.44023	0.67593	0.63328	0.00000	4.36913	0.00000	0.00000	0.00000	3.29179	0.00000	0.00000	0.66918	0.00000	1.05618	4.61526	0.00000	0.11313	0.00000	0.00000	0.00000
8	0.14015	0.74186	0.30513	0.57087	0.58436	0.09320	0.14991	1.08150	0.94936	0.04337	0.84598	0.55065	0.28611	7.89313	0.00000	0.82594	0.26712	0.77715	0.64700	0.85416	0.46215	0.92162	0.49336	0.52441	0.63379	0.88266	0.18244	0.86581	0.00000	0.47884	0.54754	1.00942	0.76083	0.55732	0.44137	0.57263	0.15121	0.49137	0.00000	0.36482	1.78196	0.91206	1.40569	2.51111	0.98213	0.88671	0.69692	1.17380	2.13467	1.41901	0.13565	0.00000	0.00000	0.00000
9	11.65392	1.14684	0.74850	0.63255	1.01784	1.28430	1.02586	1.37047	1.70304	0.05699	0.92622	0.78713	1.00100	1.20154	0.58299	1.36843	0.90216	1.19524	1.17216	1.32427	0.76030	1.25413	0.69748	0.88184	1.12890	1.08150	0.67461	1.06142	0.17083	0.96466	1.06122	0.72248	0.73797	0.74211	0.58941	0.55167	0.52195	0.61012	0.97281	1.54909	1.00167	1.96805	1.50099	1.49404	0.94014	1.84629	0.95506	1.18734	0.81932	0.96083	0.14672	0.00000	0.00588	0.30624
10	3.39284	1.00515	0.46105	0.35810	0.70171	1.12192	0.63762	1.35489	1.61056	0.15144	0.68238	0.57954	0.65239	1.53208	0.26212	1.13907	0.77574	0.95331	1.19292	1.07463	0.41018	1.08467	0.22855	0.33171	0.77900	0.08467	0.35971	0.91794	0.00000	0.90986	0.72869	0.36465	0.23629	0.52859	0.42641	0.39723	0.07383	0.23882	0.90374	0.95841	1.19202	2.58435	1.68940	2.23473	0.82647	1.79229	0.31223	0.95584	0.76616	0.86114	0.46734	0.00000	0.00246	0.01925
11	1.72660	0.66784	0.88887	3.02265	0.61346	7.35254	0.39208	1.24818	0.58208	33.74705	1.47490	0.34064	0.26058	2.31761	0.60685	0.67309	0.64352	0.38682	0.65889	0.33469	0.58746	0.72238	0.60644	0.50034	0.26249	0.07261	0.98405	0.50407	0.00000	0.28995	0.39428	1.54226	3.60998	6.61472	3.31990	1.20667	0.54046	0.26392	0.38483	0.25375	8.39953	0.77639	0.74346	0.74224	0.65163	0.62335	0.13253	0.43450	0.15923	0.34079	21.87312	31.45724	40.07626	16.03201
12	4.61538	0.82221	1.79158	2.27057	0.83950	6.98082	0.63950	0.59634	0.72687	4.14712	1.20334	0.51126	0.49720	1.72424	1.30087	0.87964	1.19217	0.80164	1.00161	0.44960	0.86396	0.69262	0.71240	0.57805	0.48698	0.40905	2.07945	0.55504	0.00000	0.27830	0.57406	1.94293	2.75468	5.82520	2.17904	1.29787	0.71703	0.68409	0.82657	0.35169	0.96559	0.80530	0.79901	0.49366	0.55588	0.79738	0.26761	0.47373	0.15065	0.29985	4.77701	6.44318	3.82278	4.45119
13	69.50488	1.01943	1.08425	0.96853	0.96204	0.48304	1.09273	0.90785	0.88138	0.27372	0.96469	1.11736	1.06462	0.91873	1.18634	1.01585	1.08561	1.03743	1.03716	1.00013	1.10759	0.97763	1.10820	1.04122	1.04057	1.10588	1.09831	1.01948	1.33643	1.07021	1.08337	1.00333	0.86516	0.60604	1.00092	1.10039	1.14694	1.17650	1.02068	0.98015	0.74382	0.75895	0.90754	0.86944	0.91013	0.85779	1.04118	0.96597	1.09891	1.03205	0.47896	0.22945	0.16702	0.50283
14	3.04910	1.00723	0.74980	0.97799	1.10957	0.81624	0.76848	1.21481	1.51350	0.33719	1.63461	1.02025	0.73157	1.27166	0.62276	0.60343	0.77159	1.07647	0.69513	1.10873	1.08738	1.16554	1.44649	1.66391	1.28745	1.16266	0.61138	1.36819	0.00000	0.72411	0.94855	0.46722	0.87365	1.01372	1.03211	1.01152	1.15385	0.80621	1.31663	1.11516	1.24674	1.27460	0.96412	1.69804	1.19011	1.48811	1.10213	1.61094	0.46881	0.93795	0.62231	0.00000	0.18242	0.90153
15	0.84968	0.83098	0.50070	0.81665	1.29063	0.07068	0.48855	1.13015	1.11300	0.65523	1.71494	0.71060	1.39787	0.00000	0.40014	0.19394	0.57741	0.67875	0.47037	0.67200	0.94020	1.01902	1.27887	1.70196	1.08182	0.90578	0.31581	1.34506	0.00000	0.34910	0.65985	0.93570	0.89673	0.92556	0.74725	0.81033	0.98765	0.30903	0.59964	0.82047	2.19973	1.45617	0.98149	1.36022	1.15828	0.95127	0.88743	1.70311	1.03234	0.87874	0.50560	0.00000	0.70589	1.45179
16	0.59939	0.26134	0.12963	0.21309	3.40079	0.00616	0.21585	1.09409	0.33145	0.62448	1.61616	0.29182	0.35334	0.00000	0.00000	0.06858	0.07499	0.16351	0.06173	0.23546	0.16475	0.36006	0.56876	0.98891	0.40405	0.39615	0.04383	0.52246	0.00000	0.00000	0.16013	0.24996	0.33693	0.36096	0.12342	0.17024	0.40875	0.16965	0.25993	0.14170	5.40706	0.34996	0.77203	0.28470	2.05581	0.13849	1.02335	1.03055	0.41743	0.94201	0.65150	0.00000	0.50116	4.27361
17	2.25660	0.90352	0.42380	0.95665	0.72174	0.02121	0.99749	1.07082	0.71690	0.04323	0.76344	1.26512	1.52484	0.00000	0.14399	0.53256	0.46491	0.55916	0.44499	1.20721	0.97688	1.23471	1.09746	1.38746	1.09359	1.04928	0.24419	1.22791	1.10277	2.11324	0.67742	1.50575	1.27356	0.71023	0.65879	1.07856	1.41423	0.90677	1.39350	1.01191	1.01070	0.70334	0.59116	1.01927	1.75181	0.49959	2.47208	1.49695	1.95277	2.28487	0.12083	0.00000	0.00049	0.21081
Base	100	3.17622	20.37019	8.52483	0.54494	0.12958	0.01461	0.06285	12.65009	0.40493	0.83937	0.04177	0.01974	0.00057	0.02230	0.01753	0.09120	0.05389	1.09647	0.03047	0.11037	1.45051	0.21341	0.07032	0.35076	0.00389	16.53850	3.35731	0.00034	0.00241	0.11770	0.00619	2.69365	0.28544	3.57966	1.82598	0.12148	0.01604	0.00384	0.01921	0.00567	0.00394	0.01090	0.00850	0.01080	9.90843	0.00579	2.72173	0.00666	0.00747	0.12948	0.00100	0.26624	0.00821