ChromHMM Report

Input Directory: /broad/compbio/anshul/projects/roadmap/segmentations/binary/chmmDefault/core_K27ac/binaryData
Output Directory: /broad/compbio/anshul/projects/roadmap/segmentations/models/core_K27ac/parallel/set1/n17
Number of States: 17
Assembly: hg19
Full ChromHMM command: LearnModel -p 0 -b 200 -f /broad/compbio/anshul/projects/roadmap/segmentations/binary/chmmDefault/core_K27ac/sets/set1/set1.filenames -i coreK27ac -l /broad/compbio/anshul/projects/encode/rawdata/annotations/genomeSize/hg19.genome /broad/compbio/anshul/projects/roadmap/segmentations/binary/chmmDefault/core_K27ac/binaryData /broad/compbio/anshul/projects/roadmap/segmentations/models/core_K27ac/parallel/set1/n17 17 hg19

Model Parameters


  • Emission Parameter SVG File
  • Emission Parameter Tab-Delimited Text File

  • Transition Parameter SVG File
  • Transition Parameter Tab-Delimited Text File

  • All Model Parameters Tab-Delimited Text File

    Genome Segmentation Files

  • E003_17_coreK27ac Segmentation File (Four Column Bed File)
  • E005_17_coreK27ac Segmentation File (Four Column Bed File)
  • E006_17_coreK27ac Segmentation File (Four Column Bed File)
  • E011_17_coreK27ac Segmentation File (Four Column Bed File)
  • E014_17_coreK27ac Segmentation File (Four Column Bed File)
  • E016_17_coreK27ac Segmentation File (Four Column Bed File)
  • E017_17_coreK27ac Segmentation File (Four Column Bed File)
  • E029_17_coreK27ac Segmentation File (Four Column Bed File)
  • E032_17_coreK27ac Segmentation File (Four Column Bed File)
  • E039_17_coreK27ac Segmentation File (Four Column Bed File)
  • E040_17_coreK27ac Segmentation File (Four Column Bed File)
  • E041_17_coreK27ac Segmentation File (Four Column Bed File)
  • E045_17_coreK27ac Segmentation File (Four Column Bed File)
  • E046_17_coreK27ac Segmentation File (Four Column Bed File)
  • E049_17_coreK27ac Segmentation File (Four Column Bed File)
  • E055_17_coreK27ac Segmentation File (Four Column Bed File)
  • E058_17_coreK27ac Segmentation File (Four Column Bed File)
  • E061_17_coreK27ac Segmentation File (Four Column Bed File)
  • E063_17_coreK27ac Segmentation File (Four Column Bed File)
  • E066_17_coreK27ac Segmentation File (Four Column Bed File)
  • E068_17_coreK27ac Segmentation File (Four Column Bed File)
  • E071_17_coreK27ac Segmentation File (Four Column Bed File)
  • E075_17_coreK27ac Segmentation File (Four Column Bed File)
  • E080_17_coreK27ac Segmentation File (Four Column Bed File)
  • E085_17_coreK27ac Segmentation File (Four Column Bed File)
  • E090_17_coreK27ac Segmentation File (Four Column Bed File)
  • E091_17_coreK27ac Segmentation File (Four Column Bed File)
  • E103_17_coreK27ac Segmentation File (Four Column Bed File)
  • E111_17_coreK27ac Segmentation File (Four Column Bed File)
  • E115_17_coreK27ac Segmentation File (Four Column Bed File)
  • E118_17_coreK27ac Segmentation File (Four Column Bed File)
  • E119_17_coreK27ac Segmentation File (Four Column Bed File)
  • E120_17_coreK27ac Segmentation File (Four Column Bed File)
  • E121_17_coreK27ac Segmentation File (Four Column Bed File)
  • E123_17_coreK27ac Segmentation File (Four Column Bed File)
  • E124_17_coreK27ac Segmentation File (Four Column Bed File)
  • E125_17_coreK27ac Segmentation File (Four Column Bed File)
  • E126_17_coreK27ac Segmentation File (Four Column Bed File)
  • E127_17_coreK27ac Segmentation File (Four Column Bed File)
  • E128_17_coreK27ac Segmentation File (Four Column Bed File)

    Custom Tracks for loading into the UCSC Genome Browser:
  • E003_17_coreK27ac Browser Custom Track Dense File
  • E003_17_coreK27ac Browser Custom Track Expanded File
  • E005_17_coreK27ac Browser Custom Track Dense File
  • E005_17_coreK27ac Browser Custom Track Expanded File
  • E006_17_coreK27ac Browser Custom Track Dense File
  • E006_17_coreK27ac Browser Custom Track Expanded File
  • E011_17_coreK27ac Browser Custom Track Dense File
  • E011_17_coreK27ac Browser Custom Track Expanded File
  • E014_17_coreK27ac Browser Custom Track Dense File
  • E014_17_coreK27ac Browser Custom Track Expanded File
  • E016_17_coreK27ac Browser Custom Track Dense File
  • E016_17_coreK27ac Browser Custom Track Expanded File
  • E017_17_coreK27ac Browser Custom Track Dense File
  • E017_17_coreK27ac Browser Custom Track Expanded File
  • E029_17_coreK27ac Browser Custom Track Dense File
  • E029_17_coreK27ac Browser Custom Track Expanded File
  • E032_17_coreK27ac Browser Custom Track Dense File
  • E032_17_coreK27ac Browser Custom Track Expanded File
  • E039_17_coreK27ac Browser Custom Track Dense File
  • E039_17_coreK27ac Browser Custom Track Expanded File
  • E040_17_coreK27ac Browser Custom Track Dense File
  • E040_17_coreK27ac Browser Custom Track Expanded File
  • E041_17_coreK27ac Browser Custom Track Dense File
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