state (Emission order)	Genome %	Rpt_All_DNA.bed.gz	Rpt_All_LINE.bed.gz	Rpt_All_LTR.bed.gz	Rpt_All_LowCmplx.bed.gz	Rpt_All_Other.bed.gz	Rpt_All_RC.bed.gz	Rpt_All_RNA.bed.gz	Rpt_All_SINE.bed.gz	Rpt_All_Satellite.bed.gz	Rpt_All_Simple.bed.gz	Rpt_All_Unknown.bed.gz	Rpt_DNA_DNA.bed.gz	Rpt_DNA_Merlin.bed.gz	Rpt_DNA_MuDR.bed.gz	Rpt_DNA_PiggyBac.bed.gz	Rpt_DNA_TcMar-Mariner.bed.gz	Rpt_DNA_TcMar-Tc2.bed.gz	Rpt_DNA_TcMar-Tigger.bed.gz	Rpt_DNA_TcMar.bed.gz	Rpt_DNA_hAT-Blackjack.bed.gz	Rpt_DNA_hAT-Charlie.bed.gz	Rpt_DNA_hAT-Tip100.bed.gz	Rpt_DNA_hAT.bed.gz	Rpt_LINE_CR1.bed.gz	Rpt_LINE_Dong-R4.bed.gz	Rpt_LINE_L1.bed.gz	Rpt_LINE_L2.bed.gz	Rpt_LINE_Penelope.bed.gz	Rpt_LINE_RTE-BovB.bed.gz	Rpt_LINE_RTE.bed.gz	Rpt_LTR_ERV.bed.gz	Rpt_LTR_ERV1.bed.gz	Rpt_LTR_ERVK.bed.gz	Rpt_LTR_ERVL-MaLR.bed.gz	Rpt_LTR_ERVL.bed.gz	Rpt_LTR_Gypsy.bed.gz	Rpt_LTR_LTR.bed.gz	Rpt_RNA_RNA.bed.gz	Rpt_RNA_TcMar-Mariner.bed.gz	Rpt_RNA_rRNA.bed.gz	Rpt_RNA_scRNA.bed.gz	Rpt_RNA_snRNA.bed.gz	Rpt_RNA_srpRNA.bed.gz	Rpt_RNA_tRNA.bed.gz	Rpt_SINE_Alu.bed.gz	Rpt_SINE_Deu.bed.gz	Rpt_SINE_MIR.bed.gz	Rpt_SINE_SINE.bed.gz	Rpt_SINE_tRNA.bed.gz	Rpt_Satellite_Satellite.bed.gz	Rpt_Satellite_acro.bed.gz	Rpt_Satellite_centr.bed.gz	Rpt_Satellite_telo.bed.gz
1	0.53540	0.76982	0.38276	1.33435	0.55765	0.00694	0.89719	1.03497	0.64536	0.04825	0.67006	1.04511	1.51869	0.00000	0.31495	0.41554	0.38243	0.35010	0.37357	1.30987	0.92391	1.05460	0.87084	1.14872	1.03412	0.99554	0.22484	1.07835	4.91614	1.92027	0.72700	1.59515	2.43965	0.96789	0.65541	1.07755	1.54879	1.11061	1.24420	0.88492	1.20662	0.67339	0.47697	1.52335	1.44866	0.43593	3.60587	1.39396	2.52768	1.70949	0.11659	0.00000	0.00317	0.43802
2	0.71663	0.94065	0.55102	1.80137	1.37296	0.13173	0.88632	1.43307	1.06640	0.06670	0.87918	0.96629	1.66881	0.00000	0.07055	0.69832	0.70028	1.11225	0.69830	1.55343	0.85248	1.11706	0.94456	1.25492	0.97895	0.68353	0.47911	0.83676	0.00000	1.35223	1.21995	2.28587	3.69830	3.65486	0.74736	0.82459	1.25384	1.49905	0.88371	1.74211	1.20779	2.62066	1.37909	0.45344	1.58879	1.08334	1.68460	0.99991	1.90062	1.61139	0.20861	0.00000	0.00000	0.00000
3	0.04026	0.55861	0.26198	0.89743	0.40745	0.03777	0.00000	0.77756	0.76796	0.02200	0.67704	1.38498	0.74808	0.00000	0.00000	1.25000	0.35193	0.20549	0.48462	0.34241	0.50093	0.69583	0.35420	0.17687	0.46670	0.00000	0.17404	0.66802	0.00000	0.00000	0.44043	0.00000	1.73444	0.37417	0.40747	0.74826	0.38509	0.00000	2.65682	0.00000	0.00000	0.00000	3.54713	0.00000	0.00000	0.70686	0.00000	0.98914	2.80649	0.00000	0.06879	0.00000	0.00000	0.00000
4	0.12094	0.76866	0.31262	0.50574	0.53223	0.04720	0.17372	1.26388	0.89355	0.06042	0.78849	0.64833	0.25035	9.14667	0.00000	0.67668	0.14643	0.54768	0.64669	0.96790	0.52441	0.98588	0.52629	0.55034	0.75927	0.75511	0.17077	0.95574	0.00000	0.55488	0.55144	1.16973	0.62979	0.44699	0.41436	0.53078	0.16182	0.49449	0.00000	0.36852	2.53169	1.78861	1.50156	2.77164	1.02183	0.80176	1.77210	1.21847	3.24346	1.47636	0.18896	0.00000	0.00000	0.00000
5	6.69989	1.14256	0.76509	0.49504	0.97237	2.01626	0.85266	1.44451	1.80036	0.12188	0.80621	0.75207	0.85226	0.47596	0.48015	1.56968	0.92102	1.22276	1.31465	1.21993	0.58239	1.21421	0.38378	0.54641	1.01219	0.65056	0.71614	0.97276	0.00000	0.78809	0.98937	0.43656	0.49549	0.77974	0.49567	0.46683	0.24287	0.35290	1.00092	1.48345	0.92873	2.32821	1.72616	1.82747	0.89480	2.02466	0.50591	0.99190	0.61646	0.91153	0.24923	0.00000	0.06098	0.10360
6	2.83849	0.97669	0.42522	0.32645	0.66526	0.56199	0.63398	1.30057	1.56016	0.15730	0.64093	0.53292	0.67260	1.73982	0.28488	1.03905	0.68602	0.84016	1.16117	1.05106	0.38744	1.05988	0.22689	0.31597	0.76135	0.06727	0.31574	0.91903	0.00000	1.04641	0.72484	0.15724	0.20261	0.39715	0.39251	0.38766	0.06377	0.22147	0.72867	0.93559	1.16186	2.53684	1.61052	2.13961	0.80076	1.72361	0.34764	0.97157	0.79245	0.84411	0.48446	0.00000	0.00294	0.02301
7	0.28375	0.87877	0.90497	2.59145	0.57274	15.06264	0.59859	3.04928	0.76599	20.11030	2.14748	0.14498	0.08133	14.10252	0.38239	0.69377	0.91782	0.61032	0.94322	0.33333	0.19639	1.03413	0.26892	0.29673	0.22044	0.00000	1.00427	0.50503	0.00000	0.00000	0.44522	0.00000	3.06889	4.70345	2.92756	1.08412	0.22668	0.00000	1.45132	0.11321	27.57588	0.86054	0.91147	1.05679	0.49670	0.89026	0.00000	0.31887	0.01880	0.09447	44.34239	51.42496	8.60224	7.31769
8	2.57987	0.71773	1.11038	3.00846	0.71329	6.68589	0.44079	0.83834	0.63942	23.64773	1.31753	0.37251	0.31688	2.61649	0.81689	0.79063	0.83598	0.43777	0.75915	0.38930	0.64658	0.72410	0.64573	0.51802	0.34322	0.11199	1.25070	0.52515	0.00000	0.31111	0.42065	1.75940	3.58431	7.34371	3.21807	1.25930	0.58069	0.41507	0.81118	0.28926	3.65334	0.70192	0.74090	0.75072	0.56485	0.68907	0.08870	0.46198	0.13344	0.30014	11.91192	17.22906	29.71806	12.65466
9	4.72057	0.85378	1.89221	1.74793	0.89237	4.21318	0.72191	0.60980	0.70660	3.02505	1.12334	0.63242	0.56507	2.33623	1.40878	1.15250	1.11103	0.96531	1.04861	0.63084	1.02041	0.68321	0.80823	0.70368	0.57402	0.41436	2.18219	0.64766	1.27128	0.30963	0.64855	1.95305	2.14526	3.92897	1.49644	1.38159	0.82087	0.92803	0.86542	0.40485	0.84201	0.65491	0.82909	0.48008	0.62590	0.75098	0.37125	0.54702	0.49643	0.43851	4.17455	5.19052	2.45500	3.11937
10	73.80701	1.03029	1.04526	0.95813	0.96601	0.55203	1.09905	0.94170	0.93891	0.21406	0.97497	1.10197	1.07381	0.88215	1.14298	1.00875	1.07561	1.04295	1.03389	1.02674	1.09396	1.00489	1.10715	1.05671	1.06212	1.16026	1.04693	1.03355	1.18293	1.08275	1.09049	1.00254	0.87006	0.61568	0.99322	1.05964	1.12829	1.15396	1.01010	1.03217	0.78632	0.82752	0.93453	0.90356	0.91692	0.92118	1.07918	1.00253	1.08723	1.03138	0.41633	0.22298	0.10697	0.49616
11	2.72866	1.00283	0.75365	0.97691	1.11309	0.88575	0.75546	1.19910	1.50695	0.26962	1.62651	0.98711	0.74634	1.42099	0.67546	0.63842	0.81101	1.10910	0.69131	1.12609	1.08716	1.15703	1.41585	1.67909	1.26627	0.93895	0.61837	1.36025	0.57526	0.72454	0.92978	0.34800	0.87494	1.03497	1.01992	1.02622	1.14801	0.76274	1.39593	1.12839	1.06967	1.38464	0.95781	1.66846	1.12930	1.48197	1.05831	1.60317	0.48690	0.84323	0.60406	0.00000	0.08600	0.98303
12	0.81393	0.83188	0.50277	0.80572	1.31946	0.06765	0.43637	1.12068	1.12561	0.65536	1.72987	0.71701	1.35711	0.00000	0.41772	0.17369	0.58859	0.69780	0.47226	0.65019	0.95176	1.01748	1.28971	1.68533	1.07816	0.79460	0.31982	1.33910	0.00000	0.36443	0.63892	0.97680	0.87804	0.88484	0.74483	0.80006	0.95311	0.32260	0.62597	0.85113	1.90614	1.37617	1.02641	1.20050	1.30290	0.96620	0.92641	1.70711	1.02347	0.94707	0.45635	0.00000	0.73039	1.44014
13	0.29721	0.46495	0.24417	0.47930	1.33467	0.00000	0.77387	0.80120	0.51830	0.21961	1.35529	0.67802	0.93725	0.00000	0.00000	0.18543	0.11261	0.36525	0.10714	0.66927	0.34880	0.65169	0.94667	1.44196	0.83498	1.21232	0.07574	1.00905	0.00000	0.00000	0.31766	0.50409	0.66394	0.69489	0.31678	0.46755	0.83927	0.40650	0.52419	0.26540	2.13522	0.55138	0.48343	0.88104	1.50213	0.22288	1.51732	1.58773	1.01312	1.51282	0.38773	0.00000	0.07495	2.28637
14	2.43998	0.92820	0.42865	0.93201	0.81214	0.03354	1.10842	1.10969	0.79327	0.03664	0.79091	1.21621	1.52849	0.00000	0.12028	0.54723	0.49886	0.70306	0.47120	1.23359	0.99489	1.25790	1.09812	1.42366	1.08598	1.13544	0.25497	1.20223	1.01989	1.98247	0.75642	1.50597	1.26656	0.76734	0.63387	1.01839	1.35618	0.83318	1.37989	1.07413	0.95623	0.77507	0.65734	0.98036	1.83844	0.59422	2.32220	1.50779	1.83184	2.37431	0.09850	0.00000	0.00045	0.23899
15	0.11730	0.49834	0.34236	0.33426	0.55584	0.05313	0.54300	1.19141	0.83358	0.30768	0.61163	0.37643	0.78835	0.00000	0.00000	0.40228	0.36898	0.09659	0.23657	0.72587	0.21309	0.72023	0.44404	1.09336	0.76503	0.00000	0.14493	1.26890	0.00000	0.02288	0.41181	0.80998	0.62426	0.39691	0.15644	0.23694	0.45927	0.07725	2.64207	0.95350	1.14719	1.28533	1.01783	0.41797	1.87244	0.58995	0.78986	1.71938	0.38031	1.68440	0.79740	0.00000	0.00000	2.59975
16	0.08828	0.43606	0.23604	0.50802	0.72669	0.00000	0.33821	1.28440	0.58935	0.17107	0.73148	0.98984	0.68969	0.00000	0.00000	0.50947	0.21946	0.08556	0.20221	0.19578	0.47643	0.61623	0.40912	1.08700	0.40457	0.00000	0.10672	0.85680	0.00000	0.00000	0.21017	0.00000	1.13742	0.56111	0.14115	0.29779	0.45362	0.16879	2.26093	0.70302	0.58131	3.64782	1.00006	0.00000	2.77612	0.30970	1.30874	1.59748	1.20840	3.10009	0.53500	0.00000	0.00000	0.00000
17	0.42197	0.17166	0.09129	0.34672	5.87387	0.05843	0.07285	1.32622	0.26084	0.14022	1.73328	0.10372	0.05197	0.00000	0.00000	0.05810	0.04608	0.03310	0.05262	0.10654	0.14011	0.25984	0.18065	0.64488	0.14642	0.00000	0.05582	0.26250	0.00000	0.12405	0.03070	0.31423	0.96604	0.39644	0.02797	0.06945	0.09263	0.09019	0.00000	0.04544	0.25404	0.70100	2.29788	0.54401	4.50157	0.19756	0.39284	0.49187	0.08388	0.07582	0.32395	0.00000	0.00000	1.80716
18	0.37562	0.41090	0.28359	0.49560	5.03125	0.12510	0.11481	3.03527	0.79548	0.43279	1.83589	0.15914	0.46100	0.00000	0.13961	0.34252	0.12880	0.18225	0.20500	0.12251	0.27646	0.57727	0.35696	1.31939	0.41284	0.30944	0.20572	0.65352	0.00000	0.90760	0.27788	1.04233	1.32131	0.55885	0.06980	0.12446	0.16537	0.16940	0.86766	0.16836	0.27324	1.84986	1.49538	1.24655	13.75226	0.75183	0.50372	0.95525	0.77841	0.72052	0.44449	0.00000	0.04228	12.96552
19	0.37424	0.15097	0.07231	0.09248	4.63071	0.00986	0.00000	0.99378	0.22290	0.43973	1.76638	0.16158	0.13557	0.00000	0.00000	0.08028	0.05669	0.02018	0.04338	0.09746	0.06397	0.20217	0.31552	0.72503	0.18331	0.00000	0.03046	0.26721	0.00000	0.00000	0.06945	0.14367	0.19891	0.20475	0.02514	0.04664	0.14494	0.08824	0.00000	0.10651	4.18981	0.28244	0.80427	0.22545	2.30434	0.08988	0.84709	0.70543	0.13475	0.44130	0.40199	0.00000	0.31823	5.02885
Base	100	3.17622	20.37019	8.52483	0.54494	0.12958	0.01461	0.06285	12.65009	0.40493	0.83937	0.04177	0.01974	0.00057	0.02230	0.01753	0.09120	0.05389	1.09647	0.03047	0.11037	1.45051	0.21341	0.07032	0.35076	0.00389	16.53850	3.35731	0.00034	0.00241	0.11770	0.00619	2.69365	0.28544	3.57966	1.82598	0.12148	0.01604	0.00384	0.01921	0.00567	0.00394	0.01090	0.00850	0.01080	9.90843	0.00579	2.72173	0.00666	0.00747	0.12948	0.00100	0.26624	0.00821