ChromHMM Report

Input Directory: /broad/compbio/anshul/projects/roadmap/segmentations/binary/chmmDefault/core_K27ac/binaryData
Output Directory: /broad/compbio/anshul/projects/roadmap/segmentations/models/core_K27ac/parallel/set1/n19
Number of States: 19
Assembly: hg19
Full ChromHMM command: LearnModel -p 0 -b 200 -f /broad/compbio/anshul/projects/roadmap/segmentations/binary/chmmDefault/core_K27ac/sets/set1/set1.filenames -i coreK27ac -l /broad/compbio/anshul/projects/encode/rawdata/annotations/genomeSize/hg19.genome /broad/compbio/anshul/projects/roadmap/segmentations/binary/chmmDefault/core_K27ac/binaryData /broad/compbio/anshul/projects/roadmap/segmentations/models/core_K27ac/parallel/set1/n19 19 hg19

Model Parameters


  • Emission Parameter SVG File
  • Emission Parameter Tab-Delimited Text File

  • Transition Parameter SVG File
  • Transition Parameter Tab-Delimited Text File

  • All Model Parameters Tab-Delimited Text File

    Genome Segmentation Files

  • E003_19_coreK27ac Segmentation File (Four Column Bed File)
  • E005_19_coreK27ac Segmentation File (Four Column Bed File)
  • E006_19_coreK27ac Segmentation File (Four Column Bed File)
  • E011_19_coreK27ac Segmentation File (Four Column Bed File)
  • E014_19_coreK27ac Segmentation File (Four Column Bed File)
  • E016_19_coreK27ac Segmentation File (Four Column Bed File)
  • E017_19_coreK27ac Segmentation File (Four Column Bed File)
  • E029_19_coreK27ac Segmentation File (Four Column Bed File)
  • E032_19_coreK27ac Segmentation File (Four Column Bed File)
  • E039_19_coreK27ac Segmentation File (Four Column Bed File)
  • E040_19_coreK27ac Segmentation File (Four Column Bed File)
  • E041_19_coreK27ac Segmentation File (Four Column Bed File)
  • E045_19_coreK27ac Segmentation File (Four Column Bed File)
  • E046_19_coreK27ac Segmentation File (Four Column Bed File)
  • E049_19_coreK27ac Segmentation File (Four Column Bed File)
  • E055_19_coreK27ac Segmentation File (Four Column Bed File)
  • E058_19_coreK27ac Segmentation File (Four Column Bed File)
  • E061_19_coreK27ac Segmentation File (Four Column Bed File)
  • E063_19_coreK27ac Segmentation File (Four Column Bed File)
  • E066_19_coreK27ac Segmentation File (Four Column Bed File)
  • E068_19_coreK27ac Segmentation File (Four Column Bed File)
  • E071_19_coreK27ac Segmentation File (Four Column Bed File)
  • E075_19_coreK27ac Segmentation File (Four Column Bed File)
  • E080_19_coreK27ac Segmentation File (Four Column Bed File)
  • E085_19_coreK27ac Segmentation File (Four Column Bed File)
  • E090_19_coreK27ac Segmentation File (Four Column Bed File)
  • E091_19_coreK27ac Segmentation File (Four Column Bed File)
  • E103_19_coreK27ac Segmentation File (Four Column Bed File)
  • E111_19_coreK27ac Segmentation File (Four Column Bed File)
  • E115_19_coreK27ac Segmentation File (Four Column Bed File)
  • E118_19_coreK27ac Segmentation File (Four Column Bed File)
  • E119_19_coreK27ac Segmentation File (Four Column Bed File)
  • E120_19_coreK27ac Segmentation File (Four Column Bed File)
  • E121_19_coreK27ac Segmentation File (Four Column Bed File)
  • E123_19_coreK27ac Segmentation File (Four Column Bed File)
  • E124_19_coreK27ac Segmentation File (Four Column Bed File)
  • E125_19_coreK27ac Segmentation File (Four Column Bed File)
  • E126_19_coreK27ac Segmentation File (Four Column Bed File)
  • E127_19_coreK27ac Segmentation File (Four Column Bed File)
  • E128_19_coreK27ac Segmentation File (Four Column Bed File)

    Custom Tracks for loading into the UCSC Genome Browser:
  • E003_19_coreK27ac Browser Custom Track Dense File
  • E003_19_coreK27ac Browser Custom Track Expanded File
  • E005_19_coreK27ac Browser Custom Track Dense File
  • E005_19_coreK27ac Browser Custom Track Expanded File
  • E006_19_coreK27ac Browser Custom Track Dense File
  • E006_19_coreK27ac Browser Custom Track Expanded File
  • E011_19_coreK27ac Browser Custom Track Dense File
  • E011_19_coreK27ac Browser Custom Track Expanded File
  • E014_19_coreK27ac Browser Custom Track Dense File
  • E014_19_coreK27ac Browser Custom Track Expanded File
  • E016_19_coreK27ac Browser Custom Track Dense File
  • E016_19_coreK27ac Browser Custom Track Expanded File
  • E017_19_coreK27ac Browser Custom Track Dense File
  • E017_19_coreK27ac Browser Custom Track Expanded File
  • E029_19_coreK27ac Browser Custom Track Dense File
  • E029_19_coreK27ac Browser Custom Track Expanded File
  • E032_19_coreK27ac Browser Custom Track Dense File
  • E032_19_coreK27ac Browser Custom Track Expanded File
  • E039_19_coreK27ac Browser Custom Track Dense File
  • E039_19_coreK27ac Browser Custom Track Expanded File
  • E040_19_coreK27ac Browser Custom Track Dense File
  • E040_19_coreK27ac Browser Custom Track Expanded File
  • E041_19_coreK27ac Browser Custom Track Dense File
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