state (Emission order)	Genome %	Rpt_All_DNA.bed.gz	Rpt_All_LINE.bed.gz	Rpt_All_LTR.bed.gz	Rpt_All_LowCmplx.bed.gz	Rpt_All_Other.bed.gz	Rpt_All_RC.bed.gz	Rpt_All_RNA.bed.gz	Rpt_All_SINE.bed.gz	Rpt_All_Satellite.bed.gz	Rpt_All_Simple.bed.gz	Rpt_All_Unknown.bed.gz	Rpt_DNA_DNA.bed.gz	Rpt_DNA_Merlin.bed.gz	Rpt_DNA_MuDR.bed.gz	Rpt_DNA_PiggyBac.bed.gz	Rpt_DNA_TcMar-Mariner.bed.gz	Rpt_DNA_TcMar-Tc2.bed.gz	Rpt_DNA_TcMar-Tigger.bed.gz	Rpt_DNA_TcMar.bed.gz	Rpt_DNA_hAT-Blackjack.bed.gz	Rpt_DNA_hAT-Charlie.bed.gz	Rpt_DNA_hAT-Tip100.bed.gz	Rpt_DNA_hAT.bed.gz	Rpt_LINE_CR1.bed.gz	Rpt_LINE_Dong-R4.bed.gz	Rpt_LINE_L1.bed.gz	Rpt_LINE_L2.bed.gz	Rpt_LINE_Penelope.bed.gz	Rpt_LINE_RTE-BovB.bed.gz	Rpt_LINE_RTE.bed.gz	Rpt_LTR_ERV.bed.gz	Rpt_LTR_ERV1.bed.gz	Rpt_LTR_ERVK.bed.gz	Rpt_LTR_ERVL-MaLR.bed.gz	Rpt_LTR_ERVL.bed.gz	Rpt_LTR_Gypsy.bed.gz	Rpt_LTR_LTR.bed.gz	Rpt_RNA_RNA.bed.gz	Rpt_RNA_TcMar-Mariner.bed.gz	Rpt_RNA_rRNA.bed.gz	Rpt_RNA_scRNA.bed.gz	Rpt_RNA_snRNA.bed.gz	Rpt_RNA_srpRNA.bed.gz	Rpt_RNA_tRNA.bed.gz	Rpt_SINE_Alu.bed.gz	Rpt_SINE_Deu.bed.gz	Rpt_SINE_MIR.bed.gz	Rpt_SINE_SINE.bed.gz	Rpt_SINE_tRNA.bed.gz	Rpt_Satellite_Satellite.bed.gz	Rpt_Satellite_acro.bed.gz	Rpt_Satellite_centr.bed.gz	Rpt_Satellite_telo.bed.gz
1	0.02618	0.47273	0.17518	1.17879	0.54685	0.00000	0.00000	1.11323	0.74414	0.35045	0.56114	0.47558	1.15037	0.00000	0.00000	4.12605	0.09335	0.21753	0.43192	0.00000	0.00000	0.59141	0.23360	0.07019	0.29621	0.00000	0.12985	0.38559	0.00000	0.00000	0.19081	0.00000	3.29946	0.09683	0.14140	0.33836	0.08024	0.00000	0.00000	0.00000	0.00000	0.00000	6.41655	0.00000	0.00000	0.74706	0.00000	0.72839	4.31571	0.00000	1.09600	0.00000	0.00000	0.00000
2	0.08462	0.43632	0.23757	0.51972	0.70289	0.00000	0.35282	1.33990	0.58718	0.17846	0.71830	1.03261	0.65373	0.00000	0.00000	0.53149	0.21597	0.04250	0.20903	0.20424	0.49702	0.61307	0.41750	1.03843	0.43087	0.00000	0.10601	0.86652	0.00000	0.00000	0.21925	0.00000	1.16255	0.53186	0.14459	0.31181	0.47323	0.17609	2.35863	0.73340	0.60643	3.80545	1.04328	0.00000	2.89609	0.30711	1.36530	1.59620	1.26062	3.23405	0.55812	0.00000	0.00000	0.00000
3	0.11730	0.49653	0.34597	0.34925	0.56885	0.05313	0.54297	1.31447	0.82617	0.24897	0.61980	0.27027	0.78831	0.00000	0.00000	0.40226	0.34692	0.09658	0.22475	0.72583	0.24052	0.71096	0.50260	1.19472	0.76106	0.00000	0.14668	1.28304	0.00000	0.02288	0.39915	0.00000	0.65069	0.42535	0.16506	0.24381	0.54198	0.07725	2.64192	0.95345	2.52756	0.93601	1.01777	0.41795	1.99223	0.57760	0.78982	1.72984	0.38028	1.70642	0.61381	0.00000	0.00000	2.59960
4	0.16023	0.16683	0.09407	0.10851	1.53802	0.00000	0.00000	1.25360	0.26961	0.90888	1.24428	0.12451	0.11440	0.00000	0.00000	0.18751	0.04509	0.04714	0.05875	0.06684	0.04968	0.23821	0.27982	0.57594	0.24882	0.00000	0.02786	0.40590	0.00000	0.00000	0.05241	0.59296	0.21424	0.20885	0.03296	0.08136	0.16695	0.00000	0.00000	0.05668	9.47287	0.28638	0.62124	0.05693	1.44919	0.06371	1.09376	1.01483	0.31472	1.17103	0.63731	0.00000	0.92934	4.63887
5	0.23446	0.14100	0.05637	0.08493	7.87376	0.01574	0.00000	1.27255	0.19200	0.30558	2.39336	0.16293	0.18289	0.00000	0.00000	0.00000	0.06390	0.00000	0.03143	0.10989	0.07178	0.18538	0.31150	0.81501	0.13269	0.00000	0.03435	0.15650	0.00000	0.00000	0.06977	1.11993	0.19338	0.19418	0.02011	0.02854	0.11806	0.14085	0.00000	0.13127	2.20572	0.00000	0.95271	0.32095	4.80251	0.11954	0.60464	0.45522	0.00000	0.25262	0.28656	0.00000	0.18598	4.52114
6	0.34759	0.42951	0.29730	0.51596	4.37123	0.13519	0.12407	3.10390	0.83920	0.45513	1.67248	0.17864	0.49817	0.00000	0.15087	0.37014	0.13919	0.18487	0.21382	0.13239	0.28704	0.60273	0.37002	1.40027	0.43197	0.33439	0.21620	0.68234	0.00000	0.98078	0.29768	0.52564	1.37550	0.62146	0.07145	0.12816	0.16554	0.18306	0.93762	0.18193	0.26738	2.26303	1.58697	1.30004	13.82031	0.79576	0.54433	0.99846	0.84117	0.65175	0.43453	0.00000	0.04189	14.23732
7	0.42464	0.16763	0.09335	0.32399	5.87765	0.05806	0.07239	1.30529	0.25857	0.14223	1.74334	0.10307	0.04008	0.00000	0.00000	0.05773	0.04004	0.02880	0.04936	0.10587	0.13923	0.25459	0.17977	0.64082	0.14804	0.00000	0.05748	0.26664	0.00000	0.12327	0.03051	0.31226	0.89491	0.39877	0.02751	0.06884	0.09205	0.08962	0.00000	0.04515	0.25244	0.83746	2.30716	0.54059	4.32459	0.19552	0.39037	0.48877	0.08336	0.07534	0.33096	0.00000	0.00000	1.79581
8	0.72390	0.94011	0.55160	1.79389	1.37723	0.13041	0.87742	1.41996	1.07183	0.06603	0.88216	0.96492	1.68054	0.00000	0.06984	0.69717	0.70240	1.09454	0.70501	1.55263	0.83696	1.11497	0.93504	1.23077	0.99338	0.67666	0.47934	0.83717	0.00000	1.33866	1.23409	2.26292	3.67941	3.60380	0.74961	0.82055	1.26086	1.49790	0.76200	1.72462	1.28625	2.59435	1.36524	0.44889	1.57284	1.08946	1.77717	1.00239	2.01550	1.59521	0.20651	0.00000	0.00000	0.00000
9	0.53487	0.77249	0.38276	1.33433	0.55743	0.00694	0.89807	1.02839	0.64603	0.04829	0.66916	1.04613	1.50182	0.00000	0.31525	0.41594	0.39969	0.37140	0.37184	1.32166	0.92941	1.05790	0.88092	1.14984	1.03302	0.99651	0.22463	1.07946	4.92095	1.92215	0.72771	1.59671	2.43966	0.96884	0.65510	1.07750	1.55488	1.11170	1.24542	0.88578	1.20780	0.67405	0.47744	1.46871	1.45007	0.43569	3.60940	1.39794	2.53016	1.71116	0.11671	0.00000	0.00318	0.43845
10	0.03754	0.65881	0.32359	0.82827	0.40412	0.04051	0.00000	0.85033	0.79987	0.02529	0.70662	1.87881	0.56684	0.00000	0.00000	1.57138	0.37743	1.07635	0.54344	0.36723	0.75088	0.79378	0.39560	0.50663	0.54517	0.00000	0.20427	0.87963	0.00000	0.00000	0.58494	0.00000	1.26070	0.53665	0.52679	0.86455	0.39032	0.00000	5.02560	0.00000	0.00000	0.00000	0.02368	2.91602	0.84501	0.71053	0.00000	1.12131	2.58356	1.22089	0.07910	0.00000	0.00000	0.00000
11	0.11196	0.76547	0.31803	0.50175	0.52436	0.05277	0.18765	1.11094	0.87974	0.07489	0.78594	0.41923	0.27044	9.88031	0.00000	0.40993	0.15817	0.43367	0.61141	1.04553	0.55759	1.01111	0.50969	0.52884	0.72113	0.00000	0.17363	0.97949	0.00000	0.59939	0.54665	1.26355	0.60585	0.46263	0.42564	0.52142	0.17479	0.53415	0.00000	0.39808	2.73475	0.70257	1.41561	2.28450	0.83920	0.77985	1.91423	1.23953	1.18230	1.21249	0.23420	0.00000	0.00000	0.00000
12	2.43349	0.92793	0.42827	0.93178	0.81142	0.03363	1.11138	1.11012	0.79200	0.03719	0.79097	1.21946	1.51939	0.00000	0.12061	0.54869	0.49542	0.70364	0.46976	1.23610	0.99572	1.25772	1.10159	1.43081	1.08341	1.13848	0.25459	1.20209	1.02261	1.98776	0.75621	1.50999	1.26593	0.76757	0.63358	1.01880	1.35528	0.83126	1.38357	1.07699	0.93184	0.77646	0.66884	0.98298	1.83314	0.59242	2.29583	1.50846	1.83673	2.37941	0.10018	0.00000	0.00045	0.23963
13	0.29632	0.46325	0.24535	0.47994	1.33471	0.00000	0.77621	0.83190	0.52080	0.22566	1.36781	0.73227	0.94009	0.00000	0.00000	0.18599	0.12204	0.36636	0.10946	0.67130	0.34225	0.64693	0.94795	1.41874	0.84040	1.21600	0.07651	1.01180	0.00000	0.00000	0.31973	0.50562	0.66524	0.70066	0.31918	0.46513	0.80745	0.40773	0.52578	0.26620	2.46496	0.55305	0.57288	0.88371	1.41276	0.22368	1.52192	1.59755	0.68892	1.38171	0.38891	0.00000	0.07518	2.55888
14	2.72888	1.00047	0.75421	0.97777	1.11547	0.88203	0.75670	1.21151	1.50682	0.28222	1.63148	0.98763	0.75138	1.42088	0.63978	0.62999	0.80689	1.11075	0.69046	1.12444	1.08158	1.15492	1.41111	1.66890	1.26306	0.99060	0.61911	1.36038	0.57521	0.72448	0.92483	0.34797	0.87648	1.02960	1.02028	1.02836	1.14384	0.76268	1.39582	1.12682	1.17071	1.40314	0.94807	1.66833	1.15454	1.48168	1.05822	1.60358	0.48686	0.84316	0.64530	0.00000	0.08422	1.01179
15	0.81506	0.83350	0.50309	0.80627	1.32885	0.07368	0.43577	1.10696	1.12502	0.65572	1.72712	0.69704	1.35524	0.00000	0.41714	0.17346	0.59646	0.69684	0.47271	0.64929	0.95798	1.01890	1.29159	1.69828	1.08193	0.79350	0.32024	1.33859	0.00000	0.36393	0.63804	0.97545	0.87788	0.89937	0.74414	0.80093	0.96876	0.32216	0.62511	0.84995	1.89022	1.37427	0.98647	1.19884	1.27614	0.96540	0.92513	1.70731	1.02205	0.94577	0.46583	0.00000	0.72939	1.34160
16	73.81944	1.03044	1.04516	0.95801	0.96582	0.55230	1.09882	0.94101	0.93911	0.21346	0.97478	1.10222	1.07400	0.88200	1.14469	1.00894	1.07529	1.04326	1.03406	1.02736	1.09422	1.00506	1.10688	1.05673	1.06223	1.15815	1.04679	1.03360	1.18273	1.08257	1.09063	1.00096	0.87005	0.61580	0.99303	1.05944	1.12816	1.15435	1.00993	1.03197	0.78244	0.82669	0.93413	0.90364	0.91602	0.92144	1.07900	1.00253	1.08609	1.03147	0.41428	0.22294	0.10705	0.49608
17	4.72712	0.85382	1.89178	1.74731	0.89297	4.21435	0.72091	0.60833	0.70695	3.02270	1.12466	0.63155	0.56429	2.33299	1.40683	1.15091	1.11480	0.96529	1.04767	0.62997	1.01918	0.68351	0.81124	0.70343	0.57383	0.41379	2.18165	0.64771	1.26952	0.30920	0.64878	1.97243	2.14445	3.91963	1.49664	1.38099	0.82034	0.92674	0.86422	0.40549	0.84084	0.65400	0.82506	0.47580	0.62503	0.75138	0.37038	0.54716	0.51062	0.43790	4.17549	5.18333	2.45112	3.11504
18	2.57667	0.71693	1.11006	3.00797	0.71312	6.66835	0.43988	0.84244	0.63916	23.66732	1.31882	0.37298	0.31728	2.61974	0.81791	0.79161	0.83427	0.43315	0.75790	0.38978	0.64548	0.72362	0.64608	0.51649	0.34214	0.11213	1.25028	0.52535	0.00000	0.31150	0.42117	1.76159	3.58420	7.34506	3.21659	1.25981	0.58118	0.42012	0.81219	0.28962	3.69174	0.70279	0.74182	0.75165	0.56556	0.68867	0.08881	0.46226	0.13361	0.30051	11.82964	17.25049	29.78637	12.70094
19	0.28361	0.88382	0.90969	2.60358	0.53831	15.24000	0.68934	2.79002	0.76806	20.05199	2.13542	0.14505	0.08137	14.10959	0.40965	0.40945	0.94326	0.61781	0.94959	0.33349	0.19649	1.04044	0.27161	0.31016	0.21919	0.00000	1.01074	0.50191	0.00000	0.00000	0.44545	0.00000	3.05841	4.76350	2.96124	1.08079	0.22680	0.00000	1.45205	0.11327	24.79917	0.86097	0.91192	1.05732	0.44314	0.89317	0.00000	0.31793	0.01881	0.09451	45.16611	51.45073	8.12989	6.76640
20	2.83934	0.97586	0.42502	0.32605	0.66457	0.56357	0.63379	1.29965	1.56070	0.15743	0.64117	0.53821	0.67240	1.73931	0.28209	1.03745	0.68643	0.82543	1.16075	1.05075	0.38715	1.05900	0.22683	0.31587	0.76407	0.09942	0.31564	0.91806	0.00000	1.04610	0.72406	0.15720	0.20241	0.39704	0.39170	0.38770	0.06375	0.22141	0.72845	0.93821	1.16152	2.56003	1.59324	2.13897	0.80052	1.72429	0.34754	0.97151	0.81544	0.84386	0.48484	0.00000	0.00294	0.02300
21	6.67680	1.14308	0.76496	0.49438	0.97219	2.01706	0.85233	1.45093	1.80044	0.12026	0.80430	0.74891	0.84905	0.47760	0.47537	1.57448	0.92161	1.22584	1.31580	1.21380	0.58188	1.21452	0.38365	0.54741	1.01197	0.65281	0.71597	0.97283	0.00000	0.79082	0.98850	0.43807	0.49294	0.78333	0.49584	0.46673	0.24197	0.34589	1.00438	1.48735	0.93195	2.33933	1.74145	1.83624	0.89593	2.02483	0.50791	0.99159	0.63312	0.91184	0.24915	0.00000	0.05854	0.10396
Base	100	3.17622	20.37019	8.52483	0.54494	0.12958	0.01461	0.06285	12.65009	0.40493	0.83937	0.04177	0.01974	0.00057	0.02230	0.01753	0.09120	0.05389	1.09647	0.03047	0.11037	1.45051	0.21341	0.07032	0.35076	0.00389	16.53850	3.35731	0.00034	0.00241	0.11770	0.00619	2.69365	0.28544	3.57966	1.82598	0.12148	0.01604	0.00384	0.01921	0.00567	0.00394	0.01090	0.00850	0.01080	9.90843	0.00579	2.72173	0.00666	0.00747	0.12948	0.00100	0.26624	0.00821