state (Emission order)	Genome %	Rpt_All_DNA.bed.gz	Rpt_All_LINE.bed.gz	Rpt_All_LTR.bed.gz	Rpt_All_LowCmplx.bed.gz	Rpt_All_Other.bed.gz	Rpt_All_RC.bed.gz	Rpt_All_RNA.bed.gz	Rpt_All_SINE.bed.gz	Rpt_All_Satellite.bed.gz	Rpt_All_Simple.bed.gz	Rpt_All_Unknown.bed.gz	Rpt_DNA_DNA.bed.gz	Rpt_DNA_Merlin.bed.gz	Rpt_DNA_MuDR.bed.gz	Rpt_DNA_PiggyBac.bed.gz	Rpt_DNA_TcMar-Mariner.bed.gz	Rpt_DNA_TcMar-Tc2.bed.gz	Rpt_DNA_TcMar-Tigger.bed.gz	Rpt_DNA_TcMar.bed.gz	Rpt_DNA_hAT-Blackjack.bed.gz	Rpt_DNA_hAT-Charlie.bed.gz	Rpt_DNA_hAT-Tip100.bed.gz	Rpt_DNA_hAT.bed.gz	Rpt_LINE_CR1.bed.gz	Rpt_LINE_Dong-R4.bed.gz	Rpt_LINE_L1.bed.gz	Rpt_LINE_L2.bed.gz	Rpt_LINE_Penelope.bed.gz	Rpt_LINE_RTE-BovB.bed.gz	Rpt_LINE_RTE.bed.gz	Rpt_LTR_ERV.bed.gz	Rpt_LTR_ERV1.bed.gz	Rpt_LTR_ERVK.bed.gz	Rpt_LTR_ERVL-MaLR.bed.gz	Rpt_LTR_ERVL.bed.gz	Rpt_LTR_Gypsy.bed.gz	Rpt_LTR_LTR.bed.gz	Rpt_RNA_RNA.bed.gz	Rpt_RNA_TcMar-Mariner.bed.gz	Rpt_RNA_rRNA.bed.gz	Rpt_RNA_scRNA.bed.gz	Rpt_RNA_snRNA.bed.gz	Rpt_RNA_srpRNA.bed.gz	Rpt_RNA_tRNA.bed.gz	Rpt_SINE_Alu.bed.gz	Rpt_SINE_Deu.bed.gz	Rpt_SINE_MIR.bed.gz	Rpt_SINE_SINE.bed.gz	Rpt_SINE_tRNA.bed.gz	Rpt_Satellite_Satellite.bed.gz	Rpt_Satellite_acro.bed.gz	Rpt_Satellite_centr.bed.gz	Rpt_Satellite_telo.bed.gz
1	0.02077	0.52460	0.19013	0.84045	0.40525	0.00000	0.00000	0.43304	0.98452	0.42094	0.39039	0.59939	1.44986	0.00000	0.00000	4.40156	0.44506	0.26262	0.39899	0.00000	0.18882	0.70721	0.10130	0.00000	0.47531	0.00000	0.11955	0.50659	0.00000	0.00000	0.24049	0.00000	2.47914	0.03051	0.08737	0.09054	0.00000	0.00000	0.00000	0.00000	0.00000	0.00000	2.49600	0.00000	0.00000	1.05107	0.00000	0.73785	4.73893	0.00000	1.31647	0.00000	0.00000	0.00000
2	0.01139	0.45601	0.16189	1.55127	0.93574	0.00000	0.00000	2.73459	0.56051	0.00000	0.83457	0.00000	0.00000	0.00000	0.00000	1.45645	0.00000	0.49997	0.49972	0.00000	0.09765	0.49037	0.53690	0.16132	0.07196	0.00000	0.15204	0.22580	0.00000	0.00000	0.00000	0.00000	4.21540	0.16692	0.20979	0.57421	0.18443	0.00000	9.39004	0.00000	0.00000	0.00000	12.45866	0.00000	0.00000	0.50273	0.00000	0.77182	1.27713	0.00000	0.00000	0.00000	0.00000	0.00000
3	0.08509	0.43934	0.23642	0.51874	0.69633	0.00000	0.35089	1.33258	0.59015	0.17748	0.71161	1.02697	0.65016	0.00000	0.00000	0.52858	0.21479	0.04227	0.20661	0.20313	0.48123	0.62351	0.41522	1.03275	0.42851	0.00000	0.10529	0.86336	0.00000	0.00000	0.21805	0.00000	1.15693	0.55556	0.14432	0.31252	0.47064	0.17513	2.34573	0.72939	0.60311	3.78464	1.03757	0.00000	2.88026	0.30917	1.35783	1.60256	1.25372	3.21637	0.55507	0.00000	0.00000	0.00000
4	0.11608	0.49275	0.34704	0.35133	0.58418	0.05369	0.54868	1.32829	0.81598	0.25530	0.62575	0.27312	0.79660	0.00000	0.00000	0.40649	0.35057	0.09760	0.22341	0.73347	0.24305	0.70421	0.48976	1.20729	0.76907	0.00000	0.14776	1.28325	0.00000	0.02312	0.40335	0.00000	0.65039	0.42982	0.16680	0.24947	0.54768	0.07806	2.66971	0.96348	2.55415	0.94585	1.02847	0.42234	2.01319	0.56483	0.79812	1.72890	0.38428	1.72437	0.63187	0.00000	0.00000	2.62695
5	0.16009	0.16703	0.09391	0.10860	1.53846	0.00000	0.00000	1.25471	0.26934	0.90969	1.24519	0.12462	0.11450	0.00000	0.00000	0.18768	0.04513	0.04718	0.05880	0.06690	0.04973	0.23843	0.28007	0.57904	0.24904	0.00000	0.02748	0.40684	0.00000	0.00000	0.05246	0.59348	0.21443	0.20903	0.03299	0.08143	0.16709	0.00000	0.00000	0.05673	9.48128	0.28663	0.62179	0.05698	1.45048	0.06365	1.09473	1.01377	0.31500	1.17207	0.63788	0.00000	0.93017	4.64299
6	0.23440	0.14100	0.05661	0.08495	7.85915	0.01574	0.00000	1.25489	0.19215	0.30565	2.39213	0.16297	0.18294	0.00000	0.00000	0.00000	0.06392	0.00000	0.03143	0.10992	0.07180	0.18543	0.31158	0.81345	0.13272	0.00000	0.03463	0.15653	0.00000	0.00000	0.06978	1.12020	0.19343	0.19423	0.02012	0.02855	0.11809	0.14088	0.00000	0.13130	2.20627	0.00000	0.95295	0.32103	4.69902	0.11957	0.60479	0.45583	0.00000	0.25268	0.28663	0.00000	0.18603	4.52226
7	0.34595	0.43397	0.29787	0.50566	4.37351	0.13583	0.12466	3.11669	0.83843	0.45729	1.67885	0.17949	0.50053	0.00000	0.15158	0.37189	0.16708	0.18575	0.22021	0.13302	0.27707	0.60598	0.37178	1.40691	0.43221	0.33598	0.21578	0.68772	0.00000	0.98543	0.29980	0.52814	1.34618	0.59824	0.07179	0.12624	0.16633	0.18393	0.94207	0.18279	0.26865	2.27377	1.62105	1.30621	13.84781	0.79476	0.54691	0.99852	0.84516	0.65484	0.43660	0.00000	0.04209	14.30485
8	0.42462	0.16596	0.09370	0.32665	5.89178	0.05806	0.07240	1.32059	0.25845	0.14224	1.74399	0.10307	0.04009	0.00000	0.00000	0.05773	0.04004	0.02880	0.04925	0.10588	0.13923	0.25101	0.17977	0.64084	0.14952	0.00000	0.05790	0.26651	0.00000	0.12327	0.03051	0.31227	0.90294	0.39878	0.02740	0.06964	0.09205	0.08963	0.00000	0.04515	0.25245	0.83749	2.30724	0.54061	4.41352	0.19529	0.39038	0.48903	0.08336	0.07534	0.33097	0.00000	0.00000	1.79586
9	0.72380	0.94058	0.55175	1.79461	1.37524	0.13043	0.87754	1.42015	1.07254	0.06604	0.88401	0.96505	1.68077	0.00000	0.06985	0.69726	0.70249	1.09701	0.70570	1.55284	0.84258	1.11489	0.93479	1.23277	0.99186	0.67675	0.47957	0.83696	0.00000	1.33884	1.23865	2.26322	3.68113	3.61555	0.74952	0.82066	1.24722	1.49811	0.76210	1.72485	1.28642	2.59470	1.36543	0.44895	1.57305	1.09012	1.77741	1.00329	2.01577	1.59542	0.20654	0.00000	0.00000	0.00000
10	0.53512	0.77233	0.38261	1.33458	0.55681	0.00694	0.89766	1.03724	0.64609	0.04827	0.66968	1.04565	1.50113	0.00000	0.31511	0.41575	0.39951	0.37123	0.37164	1.32105	0.92898	1.05787	0.88051	1.14931	1.03118	0.99605	0.22436	1.08012	4.91870	1.92127	0.72738	1.59598	2.43980	0.96840	0.65582	1.07649	1.56410	1.11119	1.39750	0.88538	1.20724	0.67374	0.47722	1.46804	1.44941	0.43591	3.68180	1.39726	2.52899	1.71038	0.11665	0.00000	0.00317	0.43825
11	0.03790	0.67635	0.32387	0.83059	0.41888	0.04012	0.00000	0.53842	0.79754	0.02505	0.69480	1.86088	0.56142	0.00000	0.00000	0.86087	0.37383	1.06608	0.59912	0.36372	0.63868	0.81817	0.39182	0.30786	0.53996	0.00000	0.20378	0.88451	0.00000	0.00000	0.57936	0.00000	1.25932	0.63186	0.53128	0.85396	0.38660	0.00000	0.00000	0.00000	0.00000	0.00000	0.02345	2.88818	0.83694	0.70203	0.00000	1.14151	2.55890	1.20924	0.07834	0.00000	0.00000	0.00000
12	0.11142	0.76609	0.32205	0.49819	0.56198	0.05302	0.18857	1.07621	0.87543	0.07525	0.79029	0.42127	0.27175	9.92843	0.00000	0.64849	0.13955	0.48097	0.60442	1.05062	0.56030	1.00362	0.53961	0.65056	0.74109	0.00000	0.17890	0.97569	0.00000	0.60231	0.54931	1.26970	0.58373	0.43075	0.42874	0.53620	0.17565	0.53675	0.00000	0.40002	2.74807	0.70599	1.19118	2.29562	0.84328	0.77259	1.92356	1.24375	2.05844	1.21840	0.23534	0.00000	0.00000	0.00000
13	2.43126	0.92841	0.42826	0.93246	0.81002	0.03366	1.11240	1.11256	0.79173	0.03722	0.79119	1.22058	1.52078	0.00000	0.12072	0.54919	0.49588	0.70857	0.46998	1.23723	0.99663	1.25822	1.10151	1.43212	1.08298	1.13952	0.25452	1.20230	1.02355	1.98959	0.75823	1.51138	1.26688	0.76956	0.63397	1.01938	1.35747	0.83203	1.38484	1.07798	0.93270	0.77718	0.66945	0.98388	1.84307	0.59211	2.28623	1.50834	1.83841	2.38159	0.10027	0.00000	0.00045	0.23985
14	0.29617	0.46314	0.24522	0.48011	1.33359	0.00000	0.77658	0.83230	0.52064	0.22577	1.36667	0.73262	0.94054	0.00000	0.00000	0.18608	0.12210	0.36654	0.10951	0.67162	0.34241	0.64651	0.94841	1.41942	0.83459	1.21658	0.07655	1.01142	0.00000	0.00000	0.31989	0.50586	0.66536	0.70100	0.31934	0.46535	0.80783	0.40793	0.52604	0.26633	2.46615	0.55332	0.57315	0.88414	1.41344	0.22337	1.52265	1.59794	0.68925	1.38237	0.38909	0.00000	0.07521	2.56011
15	2.72497	1.00074	0.75438	0.97739	1.11602	0.88329	0.75648	1.21240	1.50687	0.28204	1.63222	0.98904	0.74417	1.42292	0.64070	0.63090	0.80805	1.11170	0.69071	1.12606	1.08358	1.15489	1.41313	1.66732	1.26403	0.99202	0.61928	1.36045	0.57603	0.72552	0.92591	0.34847	0.87613	1.02725	1.02035	1.02751	1.14090	0.76377	1.39782	1.12843	1.17239	1.40515	0.94453	1.67072	1.15619	1.48169	1.05974	1.60381	0.48756	0.84437	0.64623	0.00000	0.08345	1.01324
16	0.81496	0.83363	0.50310	0.80653	1.32900	0.07369	0.43582	1.10709	1.12492	0.65580	1.72720	0.69712	1.35539	0.00000	0.41719	0.17347	0.59653	0.69692	0.47277	0.64936	0.95809	1.01909	1.29173	1.69847	1.08189	0.79359	0.32027	1.33858	0.00000	0.36397	0.63811	0.97556	0.87852	0.89947	0.74422	0.80101	0.96887	0.32219	0.62518	0.85005	1.89043	1.37442	0.98658	1.19897	1.27628	0.96526	0.92523	1.70730	1.02217	0.94587	0.46588	0.00000	0.72947	1.34175
17	73.83724	1.03043	1.04497	0.95781	0.96584	0.55271	1.09860	0.94076	0.93944	0.21334	0.97484	1.10199	1.07405	0.88179	1.14480	1.00872	1.07501	1.04307	1.03414	1.02744	1.09375	1.00511	1.10652	1.05656	1.06230	1.15787	1.04654	1.03367	1.18245	1.08230	1.09072	1.00072	0.86989	0.61609	0.99276	1.05923	1.12798	1.15319	1.00969	1.03145	0.78226	0.82762	0.93399	0.90343	0.91564	0.92181	1.07859	1.00269	1.08545	1.03062	0.41411	0.22289	0.10696	0.49596
18	4.73487	0.85402	1.89185	1.74628	0.89333	4.19717	0.71972	0.61167	0.70669	3.01868	1.12357	0.63051	0.56336	2.32917	1.40452	1.15447	1.11660	0.96910	1.04674	0.62893	1.02108	0.68414	0.81147	0.70576	0.57346	0.41311	2.18156	0.64843	1.26744	0.30869	0.65379	1.96920	2.14207	3.90968	1.49645	1.38156	0.81942	0.93904	0.86280	0.41410	0.83946	0.65293	0.82596	0.47502	0.63045	0.75098	0.36978	0.54734	0.51572	0.44650	4.17051	5.17484	2.44762	3.10994
19	2.57851	0.71709	1.11051	3.00803	0.71317	6.66686	0.43957	0.84184	0.63939	23.63561	1.31886	0.37271	0.31705	2.61786	0.81732	0.79104	0.83642	0.43284	0.75862	0.38950	0.64501	0.72324	0.64679	0.51683	0.34260	0.11205	1.25085	0.52522	0.00000	0.31127	0.42163	1.76033	3.58512	7.34417	3.21622	1.25963	0.58100	0.41982	0.81161	0.28941	3.68909	0.70229	0.74129	0.75111	0.56515	0.68895	0.08875	0.46233	0.13351	0.30029	11.77310	17.23813	29.76596	12.69184
20	0.28387	0.88650	0.91027	2.59982	0.53624	15.33151	0.68872	2.78748	0.76610	20.17333	2.13557	0.14492	0.08130	14.09675	0.40928	0.40908	0.94240	0.61725	0.95143	0.33319	0.19631	1.04508	0.27136	0.30988	0.22506	0.00000	1.01134	0.50194	0.00000	0.00000	0.44417	0.00000	3.04323	4.77117	2.96356	1.07991	0.22659	0.00000	1.45072	0.11316	24.77659	0.86019	0.91109	1.05636	0.44273	0.89063	0.00000	0.31805	0.01879	0.09443	45.56155	51.40389	8.12249	6.76024
21	2.83546	0.97590	0.42485	0.32614	0.66433	0.56083	0.63466	1.29554	1.56009	0.15717	0.64087	0.53679	0.67332	1.74169	0.28248	1.03380	0.68018	0.82464	1.16135	1.04639	0.38721	1.05933	0.22609	0.31475	0.76397	0.09955	0.31531	0.91877	0.00000	1.04753	0.72043	0.15741	0.20334	0.39607	0.39126	0.38772	0.06383	0.22171	0.72945	0.92200	1.16311	2.56354	1.59543	2.14190	0.79845	1.72364	0.34801	0.97109	0.81656	0.84044	0.48404	0.00000	0.00294	0.02304
22	6.65605	1.14295	0.76455	0.49424	0.97218	2.02035	0.85498	1.45476	1.80094	0.12090	0.80352	0.75174	0.85170	0.47909	0.47250	1.57736	0.92207	1.22277	1.31504	1.21638	0.58344	1.21457	0.38484	0.54664	1.01176	0.65485	0.71570	0.97191	0.00000	0.79328	0.98418	0.43944	0.49230	0.78284	0.49602	0.46663	0.24352	0.34696	1.00751	1.49585	0.93485	2.33406	1.74505	1.84196	0.89427	2.02567	0.50949	0.99087	0.62052	0.91663	0.24998	0.00000	0.05909	0.10428
Base	100	3.17622	20.37019	8.52483	0.54494	0.12958	0.01461	0.06285	12.65009	0.40493	0.83937	0.04177	0.01974	0.00057	0.02230	0.01753	0.09120	0.05389	1.09647	0.03047	0.11037	1.45051	0.21341	0.07032	0.35076	0.00389	16.53850	3.35731	0.00034	0.00241	0.11770	0.00619	2.69365	0.28544	3.57966	1.82598	0.12148	0.01604	0.00384	0.01921	0.00567	0.00394	0.01090	0.00850	0.01080	9.90843	0.00579	2.72173	0.00666	0.00747	0.12948	0.00100	0.26624	0.00821