ChromHMM Report

Input Directory: /broad/compbio/anshul/projects/roadmap/segmentations/binary/chmmDefault/core_K27ac/binaryData
Output Directory: /broad/compbio/anshul/projects/roadmap/segmentations/models/core_K27ac/parallel/set1/n22
Number of States: 22
Assembly: hg19
Full ChromHMM command: LearnModel -p 0 -b 200 -f /broad/compbio/anshul/projects/roadmap/segmentations/binary/chmmDefault/core_K27ac/sets/set1/set1.filenames -i coreK27ac -l /broad/compbio/anshul/projects/encode/rawdata/annotations/genomeSize/hg19.genome /broad/compbio/anshul/projects/roadmap/segmentations/binary/chmmDefault/core_K27ac/binaryData /broad/compbio/anshul/projects/roadmap/segmentations/models/core_K27ac/parallel/set1/n22 22 hg19

Model Parameters


  • Emission Parameter SVG File
  • Emission Parameter Tab-Delimited Text File

  • Transition Parameter SVG File
  • Transition Parameter Tab-Delimited Text File

  • All Model Parameters Tab-Delimited Text File

    Genome Segmentation Files

  • E003_22_coreK27ac Segmentation File (Four Column Bed File)
  • E005_22_coreK27ac Segmentation File (Four Column Bed File)
  • E006_22_coreK27ac Segmentation File (Four Column Bed File)
  • E011_22_coreK27ac Segmentation File (Four Column Bed File)
  • E014_22_coreK27ac Segmentation File (Four Column Bed File)
  • E016_22_coreK27ac Segmentation File (Four Column Bed File)
  • E017_22_coreK27ac Segmentation File (Four Column Bed File)
  • E029_22_coreK27ac Segmentation File (Four Column Bed File)
  • E032_22_coreK27ac Segmentation File (Four Column Bed File)
  • E039_22_coreK27ac Segmentation File (Four Column Bed File)
  • E040_22_coreK27ac Segmentation File (Four Column Bed File)
  • E041_22_coreK27ac Segmentation File (Four Column Bed File)
  • E045_22_coreK27ac Segmentation File (Four Column Bed File)
  • E046_22_coreK27ac Segmentation File (Four Column Bed File)
  • E049_22_coreK27ac Segmentation File (Four Column Bed File)
  • E055_22_coreK27ac Segmentation File (Four Column Bed File)
  • E058_22_coreK27ac Segmentation File (Four Column Bed File)
  • E061_22_coreK27ac Segmentation File (Four Column Bed File)
  • E063_22_coreK27ac Segmentation File (Four Column Bed File)
  • E066_22_coreK27ac Segmentation File (Four Column Bed File)
  • E068_22_coreK27ac Segmentation File (Four Column Bed File)
  • E071_22_coreK27ac Segmentation File (Four Column Bed File)
  • E075_22_coreK27ac Segmentation File (Four Column Bed File)
  • E080_22_coreK27ac Segmentation File (Four Column Bed File)
  • E085_22_coreK27ac Segmentation File (Four Column Bed File)
  • E090_22_coreK27ac Segmentation File (Four Column Bed File)
  • E091_22_coreK27ac Segmentation File (Four Column Bed File)
  • E103_22_coreK27ac Segmentation File (Four Column Bed File)
  • E111_22_coreK27ac Segmentation File (Four Column Bed File)
  • E115_22_coreK27ac Segmentation File (Four Column Bed File)
  • E118_22_coreK27ac Segmentation File (Four Column Bed File)
  • E119_22_coreK27ac Segmentation File (Four Column Bed File)
  • E120_22_coreK27ac Segmentation File (Four Column Bed File)
  • E121_22_coreK27ac Segmentation File (Four Column Bed File)
  • E123_22_coreK27ac Segmentation File (Four Column Bed File)
  • E124_22_coreK27ac Segmentation File (Four Column Bed File)
  • E125_22_coreK27ac Segmentation File (Four Column Bed File)
  • E126_22_coreK27ac Segmentation File (Four Column Bed File)
  • E127_22_coreK27ac Segmentation File (Four Column Bed File)
  • E128_22_coreK27ac Segmentation File (Four Column Bed File)

    Custom Tracks for loading into the UCSC Genome Browser:
  • E003_22_coreK27ac Browser Custom Track Dense File
  • E003_22_coreK27ac Browser Custom Track Expanded File
  • E005_22_coreK27ac Browser Custom Track Dense File
  • E005_22_coreK27ac Browser Custom Track Expanded File
  • E006_22_coreK27ac Browser Custom Track Dense File
  • E006_22_coreK27ac Browser Custom Track Expanded File
  • E011_22_coreK27ac Browser Custom Track Dense File
  • E011_22_coreK27ac Browser Custom Track Expanded File
  • E014_22_coreK27ac Browser Custom Track Dense File
  • E014_22_coreK27ac Browser Custom Track Expanded File
  • E016_22_coreK27ac Browser Custom Track Dense File
  • E016_22_coreK27ac Browser Custom Track Expanded File
  • E017_22_coreK27ac Browser Custom Track Dense File
  • E017_22_coreK27ac Browser Custom Track Expanded File
  • E029_22_coreK27ac Browser Custom Track Dense File
  • E029_22_coreK27ac Browser Custom Track Expanded File
  • E032_22_coreK27ac Browser Custom Track Dense File
  • E032_22_coreK27ac Browser Custom Track Expanded File
  • E039_22_coreK27ac Browser Custom Track Dense File
  • E039_22_coreK27ac Browser Custom Track Expanded File
  • E040_22_coreK27ac Browser Custom Track Dense File
  • E040_22_coreK27ac Browser Custom Track Expanded File
  • E041_22_coreK27ac Browser Custom Track Dense File
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