ChromHMM Report

Input Directory: /broad/compbio/anshul/projects/roadmap/segmentations/binary/chmmDefault/core_K27ac/binaryData
Output Directory: /broad/compbio/anshul/projects/roadmap/segmentations/models/core_K27ac/parallel/set1/n25
Number of States: 25
Assembly: hg19
Full ChromHMM command: LearnModel -p 0 -b 200 -f /broad/compbio/anshul/projects/roadmap/segmentations/binary/chmmDefault/core_K27ac/sets/set1/set1.filenames -i coreK27ac -l /broad/compbio/anshul/projects/encode/rawdata/annotations/genomeSize/hg19.genome /broad/compbio/anshul/projects/roadmap/segmentations/binary/chmmDefault/core_K27ac/binaryData /broad/compbio/anshul/projects/roadmap/segmentations/models/core_K27ac/parallel/set1/n25 25 hg19

Model Parameters


  • Emission Parameter SVG File
  • Emission Parameter Tab-Delimited Text File

  • Transition Parameter SVG File
  • Transition Parameter Tab-Delimited Text File

  • All Model Parameters Tab-Delimited Text File

    Genome Segmentation Files

  • E003_25_coreK27ac Segmentation File (Four Column Bed File)
  • E005_25_coreK27ac Segmentation File (Four Column Bed File)
  • E006_25_coreK27ac Segmentation File (Four Column Bed File)
  • E011_25_coreK27ac Segmentation File (Four Column Bed File)
  • E014_25_coreK27ac Segmentation File (Four Column Bed File)
  • E016_25_coreK27ac Segmentation File (Four Column Bed File)
  • E017_25_coreK27ac Segmentation File (Four Column Bed File)
  • E029_25_coreK27ac Segmentation File (Four Column Bed File)
  • E032_25_coreK27ac Segmentation File (Four Column Bed File)
  • E039_25_coreK27ac Segmentation File (Four Column Bed File)
  • E040_25_coreK27ac Segmentation File (Four Column Bed File)
  • E041_25_coreK27ac Segmentation File (Four Column Bed File)
  • E045_25_coreK27ac Segmentation File (Four Column Bed File)
  • E046_25_coreK27ac Segmentation File (Four Column Bed File)
  • E049_25_coreK27ac Segmentation File (Four Column Bed File)
  • E055_25_coreK27ac Segmentation File (Four Column Bed File)
  • E058_25_coreK27ac Segmentation File (Four Column Bed File)
  • E061_25_coreK27ac Segmentation File (Four Column Bed File)
  • E063_25_coreK27ac Segmentation File (Four Column Bed File)
  • E066_25_coreK27ac Segmentation File (Four Column Bed File)
  • E068_25_coreK27ac Segmentation File (Four Column Bed File)
  • E071_25_coreK27ac Segmentation File (Four Column Bed File)
  • E075_25_coreK27ac Segmentation File (Four Column Bed File)
  • E080_25_coreK27ac Segmentation File (Four Column Bed File)
  • E085_25_coreK27ac Segmentation File (Four Column Bed File)
  • E090_25_coreK27ac Segmentation File (Four Column Bed File)
  • E091_25_coreK27ac Segmentation File (Four Column Bed File)
  • E103_25_coreK27ac Segmentation File (Four Column Bed File)
  • E111_25_coreK27ac Segmentation File (Four Column Bed File)
  • E115_25_coreK27ac Segmentation File (Four Column Bed File)
  • E118_25_coreK27ac Segmentation File (Four Column Bed File)
  • E119_25_coreK27ac Segmentation File (Four Column Bed File)
  • E120_25_coreK27ac Segmentation File (Four Column Bed File)
  • E121_25_coreK27ac Segmentation File (Four Column Bed File)
  • E123_25_coreK27ac Segmentation File (Four Column Bed File)
  • E124_25_coreK27ac Segmentation File (Four Column Bed File)
  • E125_25_coreK27ac Segmentation File (Four Column Bed File)
  • E126_25_coreK27ac Segmentation File (Four Column Bed File)
  • E127_25_coreK27ac Segmentation File (Four Column Bed File)
  • E128_25_coreK27ac Segmentation File (Four Column Bed File)

    Custom Tracks for loading into the UCSC Genome Browser:
  • E003_25_coreK27ac Browser Custom Track Dense File
  • E003_25_coreK27ac Browser Custom Track Expanded File
  • E005_25_coreK27ac Browser Custom Track Dense File
  • E005_25_coreK27ac Browser Custom Track Expanded File
  • E006_25_coreK27ac Browser Custom Track Dense File
  • E006_25_coreK27ac Browser Custom Track Expanded File
  • E011_25_coreK27ac Browser Custom Track Dense File
  • E011_25_coreK27ac Browser Custom Track Expanded File
  • E014_25_coreK27ac Browser Custom Track Dense File
  • E014_25_coreK27ac Browser Custom Track Expanded File
  • E016_25_coreK27ac Browser Custom Track Dense File
  • E016_25_coreK27ac Browser Custom Track Expanded File
  • E017_25_coreK27ac Browser Custom Track Dense File
  • E017_25_coreK27ac Browser Custom Track Expanded File
  • E029_25_coreK27ac Browser Custom Track Dense File
  • E029_25_coreK27ac Browser Custom Track Expanded File
  • E032_25_coreK27ac Browser Custom Track Dense File
  • E032_25_coreK27ac Browser Custom Track Expanded File
  • E039_25_coreK27ac Browser Custom Track Dense File
  • E039_25_coreK27ac Browser Custom Track Expanded File
  • E040_25_coreK27ac Browser Custom Track Dense File
  • E040_25_coreK27ac Browser Custom Track Expanded File
  • E041_25_coreK27ac Browser Custom Track Dense File
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